Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00400 ATACTCTGATTTTTATTATCAACAACACCCTTTAGTTTTCTCTCATTTCTCTTTCCTTTCTTCTTCTTCCTTCTTCTTCTTCTTCATCATTTGTTATGGGTAAGGATCTTAATTTTTTTACACAGAGGTTAATGTTATGCTCAATTTTATTTGTAGTTCTGCTTGTTTAATTGTTAATGTTTAGAGAGGGGTTCTTTTTTTTGTGTGGTTTGAGAGATAGATAGATAGCCATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACAACACCAAATCTCCCGACGCCGACTCCGATACTCCGACAAACATTCCGCCCTCCTCCGTCAAATCTCTCCCCTTCACCAACGGCGTTCTCAAGCGCCACCACCACCGGCAACCGACGGTGGCTGTTTCTTATAAAGAATGTCTTAAAAATCACGCCGCCAGTTTAGGAGCTCACGCTTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCTACCCCCACTGATCCCACTTCCCTTAAATGCGCCGCATGCGGTTGTCACCGGAATTTCCACCGCCGTGACCCCGAAGATCCAATTTCAACTTTAGCTATAAATACCGCGCCGACTCATGTCATCGAGTATCAGCCTCACCACCGTCATCACCCTCCACCGCCACCGGGGAATCGAAGCCCGAATTCTGCATCTCCTCCGCCGATCTCGTCGTCGTATTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCGGCTGGGTTGTCGGGTCGTCCGCCGGAAAATAATATACAGGGGAATAATTCTGTTCTGACGGTGAGTCCGAATGCCCGCAAACGGTTTCGGACGAAATTCAGTAACGAACAGAAGGAAAAAATGCTGGATTTCGCAGAACGAGTTGGATGGAAAATGCAGAAAAGAGATGAAGATTTGGTTCGAGATTTTTGTAATCAAGTAGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCCGACTCCAATGGCATCACCGCCACCACCGCCGCCGTCAATGAACCAGATGGGGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGATCTACCACTCCCCAAGTAATTAATTAATAAAAACTCCATGATCATCCCCTGATACGGAAATCCAAGCTAGGTAGTTCTGTTTTTTTTTTTTTTTTTGAAACTTTTAATTTTTAGTTTAGTGTTGAATTAAGAGATGACCAGTGAGAAGATCATAACCCTCTTTGGAGGTTTCTATAACATGAAATTATTAATTAAGAACAGAGGAGAGAGGAGAAAGGAAAGCATTAATCATTAATCCTTATTGATTACTTCTCTTAATTTCTTTCCTCATCTCTATTAATTACTTTATGAATTTTGGGTTAAATGGATTAAGATTAAGATTACGCGGGTTGATGTTATTCTTTGGAGATTTGGAATAAATAAATCTAATTTAATCTAA 1485 41.95 MDLAPAPITTSSNNNTKSPDADSDTPTNIPPSSVKSLPFTNGVLKRHHHRQPTVAVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENNIQGNNSVLTVSPNARKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGITATTAAVNEPDGGLHMHIGSNGSSSSS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8781289 8782773 + XM_039035248.1 Bhi06g00400 36739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00400 291 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 269 - -
Bhi06g00400 291 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 9 269 - -
Bhi06g00400 291 MobiDBLite consensus disorder prediction 130 157 - -
Bhi06g00400 291 Gene3D - 184 257 - -
Bhi06g00400 291 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Bhi06g00400 291 SUPERFAMILY Homeodomain-like 185 257 IPR009057 -
Bhi06g00400 291 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 253 IPR006455 -
Bhi06g00400 291 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Bhi06g00400 291 MobiDBLite consensus disorder prediction 1 39 - -
Bhi06g00400 291 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00400 - - - csv:101213548 440.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00810 Bhi-Chr4:20322896 Bhi06g00400 Bhi-Chr6:8781289 1.64E-50 dispersed
Bhi06g00400 Bhi-Chr6:8781289 Bhi11g00836 Bhi-Chr11:23129785 7.69E-45 dispersed
Bhi11g03003 Bhi-Chr11:81564559 Bhi06g00400 Bhi-Chr6:8781289 3.23E-98 wgd
Bhi06g00400 Bhi-Chr6:8781289 Bhi07g01569 Bhi-Chr7:44900340 1.56E-57 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1327 PF04770 ZF-HD_dimer 1.10E-28 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00400 Bhi_Chr06 FPKM 32.198334 32.128494 27.805265 22.86647 17.114861 18.265575 15.922794 25.005291 23.666527 22.951971