Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00485 CCAAAAAAAAAAAAAAAAAAGAAATTTTGTTTAAAAAAGCTTTCTTCTTCCTTTATTAGTAGTTCACTTGAGCAAATTTGAGATCCATTTCTTGTCTGTCTGAAGAGCTTTGACCTCAGATTTGTTCTGTCAACTTTCATGGGAAAGTCCCCCTCAACTTCTGGATTCGGTTTCCCTTTAATAATTTAATCCCCATTTCTCAGATCTCTTTTCCCAATACTACAAATCACTCTCTTCTCACACTTCTTCCTCCACATTTCTTCTGTTTCAATGGCCATTTCTTCTTCCAACTGAAAATTTTCCCCATTTTTCCATCTGGGTGTTTCTCCTTTTCTTCATTTTCTCCTCTGTTTTCCCTTTCAATCGATACCCAGATGGCTCCCAGCTCTGTTGTGGTCACAATTGAGAAGCATAACAGCTTCCCTTTAGTGGAAATCAATGGCTCTGATTCTTTGTTACTTCCTGAGAAACAGAAGGCTGCTAGTCCCAAGCAGCTCACGTGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTGAAAACTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCAGATATTAGCGAAGATGATTCCAAAAGCCGAGGGAAGTTGTATAGATTCATCAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTAATCGTTGAAGTTGTTGCTCATTTCAAGAAGTGGAATCTACAAATGATTCAGCCATTGGAGCTTCTTGAGGTTCATGGGATTGTTCAATGGTTTTATGTTTCCTGGCTTTCGTTTCGTGTTGATTACATTGCTCCGTTGGTATTAATGCTTTCCAAATTCTGCATTATTCTGTTCTTGATTCAATCCCTCGATCGTCTTGTTCTCTGTTTTGGCTGCTTTTGGATCAAGTATAAGAAAATCAAACCCACGATTCAAGATGATGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCAATTGCTGCTGCTTGTGAGCTTGATTGGCCAAGGAATCGGATTTTGATTCAAGTTCTAGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGTTACAAAGCTGGGAATCTCAAGTCTGCTATGGCTTGTGATTACGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTAACTATCCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTTAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGGGTTTTCTTGAATTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAACGAAAGCACTTGAGGAATCTGGTGGCTGGCTCGAGCGAACGACCGTGGAAGATATGGATATCGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTTCCATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCTTGAGAAAACTCATACTTCCATTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTAACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCTCCAAAATCCTTCCCTTTCTTGATCCCATATCTCTTGTTTGAGAACACCATGTCTGTCACAAAGTTCAATGCCATGGTATCGGGGCTATTCCAGCTCGGAAGTTCATACGAATGGGTCGTGACAAAGAAGACAGGACGATCATCTGAATCCGACTTCTTAGCATTCGCAGAACGAGAGTCGAAAACATCGAACGAGGAGAAGATTCTAAGGAGACATTCGGAGTCGGGGCTCGAGTTATTGAGTAAATTGAACCAACAAGAGATCAACAAGCAAAAGGGTTCAAAGAAGAAGAGAAACAAAGTGTATAGAAAAGAGCTAGCTCTTGCTTTTCTGTTGCTCACTGCATCTGCTAGAAGCTTGCTGTCTGAACATGGAGTTCATTTCTATTTCTTGCTTTTTCAAGGTTTGTCATTCCTGGTGGTGGGCTTGGACTTGATTGGTGAGCAAATGAACTAAAAAAATGTTTGGAGTGGATTTCATAAGTTTTTTTTTTTCTTTTCTTTTTGGTGTTTTAGGCCCTTCAAAGATTGGGCACAGAATGGACTAAAAAATGATAGATTTTGAAAAGAAAAAAAAAGGTATTTGGTGTTTGAAAATTGGTAGATAAAGATTTTTAGAGTTTTTTTTTTTCTTCAGTAAATTTGTACAATGATACGTTATAGTATTGTTAGTATATGGGTTTCAAACACGAAATAATGGCAATTCTGAGTATAAGAGATAAGTTATTCTAA 2659 38.62 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKTVFASVKKRIAHADISEDDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLQMIQPLELLEVHGIVQWFYVSWLSFRVDYIAPLVLMLSKFCIILFLIQSLDRLVLCFGCFWIKYKKIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNEEKILRRHSESGLELLSKLNQQEINKQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11017614 11020563 + XM_039033552.1 Bhi06g00485 36824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00485 669 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 195 422 IPR029044 -
Bhi06g00485 669 PANTHER - 2 668 - -
Bhi06g00485 669 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 2 668 - -
Bhi06g00485 669 Pfam Glycosyl transferase family group 2 297 502 IPR001173 -
Bhi06g00485 669 SUPERFAMILY Nucleotide-diphospho-sugar transferases 205 505 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00485 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1249.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00485 Bhi-Chr6:11017614 Bhi09g02382 Bhi-Chr9:64961583 0 dispersed
Bhi06g00485 Bhi-Chr6:11017614 Bhi09g03190 Bhi-Chr9:81771372 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g02382 . 1 695 REM Transcription Factor Family AT2G24630 77.7 0.0e+00 1097.8
Bhi06g00485 . 6 669 REM Transcription Factor Family AT2G24630 69.1 2.9e-267 918.7
Bhi09g03190 CCT 1 706 REM Transcription Factor Family AT2G24630 64.2 6.2e-262 901.0
Bhi04g00461 CCT 5 698 REM Transcription Factor Family AT2G24630 66.8 3.1e-261 898.7
Bhi09g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.9 2.1e-246 849.4
Bhi09g02382 . 1 695 REM Transcription Factor Family AT2G24630 77.7 0.0e+00 1097.8
Bhi06g00485 . 6 669 REM Transcription Factor Family AT2G24630 69.1 2.9e-267 918.7
Bhi09g03190 CCT 1 706 REM Transcription Factor Family AT2G24630 64.2 6.2e-262 901.0
Bhi04g00461 CCT 5 698 REM Transcription Factor Family AT2G24630 66.8 3.1e-261 898.7
Bhi09g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.9 2.1e-246 849.4
Bhi09g02382 . 1 695 REM Transcription Factor Family AT2G24630 77.7 0.0e+00 1097.8
Bhi06g00485 . 6 669 REM Transcription Factor Family AT2G24630 69.1 2.9e-267 918.7
Bhi09g03190 CCT 1 706 REM Transcription Factor Family AT2G24630 64.2 6.2e-262 901.0
Bhi04g00461 CCT 5 698 REM Transcription Factor Family AT2G24630 66.8 3.1e-261 898.7
Bhi09g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.9 2.1e-246 849.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00485 Bhi_Chr06 FPKM 6.483991 7.058191 0.755178 1.030361 13.979939 14.592756 15.743544 0.0 0.0 0.0