Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00518 AAAAAAAAAAAAACCATTTCATTTGCATCAAATCAAAGTCGTCTCCAAGTCCATTCATAATTTTTCTGGAATTCTGGTTAAATTCCAGAAATAAAATTAATTTTCTTTTAAATTTTATTTGTTTTCTGTATTTTTAATAGCGGCGACGGCGAGAGATTCAATCACGAGAACTCGGAGTCAATAATTAGTTGGAAGCAAATTAAAAAAAGAAAAAAAAAGAGGTAAAATTCATTAATAATCACTGAAAGAGAGTCCAAATCTGAACCTTCATCGTCTATCTCTACTTGGACTCTGCAATCTGAATGAAAATCCACTTCGATTTCACTTTTCTGTGAGCTTCTTCCACTTTTTTCTTTCTTTGGAGTTCGATTTTTTAGCTTCCTTCGTCTAACCCTAGATAGTTCGTGAAGTGAAGTAACTTTTGTCTTTTGCTTTGTCTTTGCTTATTTTCAGTTGTGCAAATCTAAGAAAATTTTTTCAGAGGTCTTGGAAGCTTTGTTGGTTGTTTGCTGGTAGATGGTCTTAGAACTTAATGTGCTGAAGGCTAAAGAGATGGCATGCTTATTGACATCAACTTTTTTGGGGTTCATTGGATGAACTCGTTTTCCATTTTTCCTGATGCAGTTACGAGTTATTTACGGTGTCCTGCTGATCTGAGAAAAATGCCATCAAAATGGAAAATTCCTTACATTGATTTGAAGATTATTTCTTCAGAATATATTTTATTTAGTTTTATGTCAGTTGGGACATCTTTGGGCAAAGAAGGTTCGCTGCTGTAATGTAAAAGGAAAATTATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTATAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAACGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACGGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCATGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCCCATGGGCATGCTCCATTTTCTAAATACCCCCCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCCGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTAGATGGCCTTGATCCATTAGGGGAGCGTTTTAAGAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACGTAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAACGCTGAATTACCCTACCGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATGAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATGTAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTATTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATCACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTGCAACGCAAAGGGCGGTTTAAAGTTACTTCGGCAGAGCTTAGTCCGAAGGCAATGGCTTTGTAACCATTGCCATTCTATTTTTGTATTTAGGGTCCTATGACGGGCTCATTCAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTGCCATCAGTGCA 2572 39.7 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNVEDLDVHTTQQRNKNNEFTFPVEGSSLETLNYPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDVSTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNHSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKAMAL 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11843713 11854002 + XM_039035189.1 Bhi06g00518 36857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00518 551 MobiDBLite consensus disorder prediction 510 526 - -
Bhi06g00518 551 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Bhi06g00518 551 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 548 - -
Bhi06g00518 551 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 548 - -
Bhi06g00518 551 MobiDBLite consensus disorder prediction 496 526 - -
Bhi06g00518 551 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g00518 551 Gene3D Transferase(Phosphotransferase) domain 1 97 312 - -
Bhi06g00518 551 CDD STKc_OSR1_SPAK 14 277 - -
Bhi06g00518 551 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Bhi06g00518 551 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g00518 551 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g00518 551 SUPERFAMILY Protein kinase-like (PK-like) 13 296 IPR011009 -
Bhi06g00518 551 MobiDBLite consensus disorder prediction 449 464 - -
Bhi06g00518 551 MobiDBLite consensus disorder prediction 437 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00518 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1095.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00518 Bhi-Chr6:11843713 Bhi06g00520 Bhi-Chr6:11843714 0 dispersed
Bhi09g03449 Bhi-Chr9:87311112 Bhi06g00518 Bhi-Chr6:11843713 5.61E-72 dispersed
Bhi06g00517 Bhi-Chr6:11843713 Bhi06g00518 Bhi-Chr6:11843713 0 tandem
Bhi06g00518 Bhi-Chr6:11843713 Bhi06g00519 Bhi-Chr6:11843714 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g03449 . 1 689 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 9.3e-226 780.8
Bhi09g03448 . 1 690 MAP Kinase Kinase Kinase Kinase AT1G53165 63.6 2.3e-224 776.2
Bhi09g03450 . 1 601 MAP Kinase Kinase Kinase Kinase AT1G53165 60.5 2.7e-180 629.8
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 5.2e-67 253.4
Bhi09g03449 . 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 65.6 2.8e-230 795.8
Bhi09g03448 . 1 689 MAP Kinase Kinase Kinase Kinase AT3G15220 65.5 5.3e-229 791.6
Bhi09g03450 . 1 600 MAP Kinase Kinase Kinase Kinase AT3G15220 62.3 8.9e-184 641.3
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 2.3e-67 254.6
Bhi07g00260 . 3 840 MAP Kinase Kinase Kinase Kinase AT1G69220 58.1 1.4e-241 833.6
Bhi06g00519 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00521 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00523 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00520 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00522 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00524 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00517 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 9.7e-252 867.1
Bhi06g00518 . 1 547 MAP Kinase Kinase Kinase Kinase AT5G14720 69.2 8.8e-221 764.2
Bhi09g03450 . 1 191 MAP Kinase Kinase Kinase Kinase AT5G14720 50.5 2.6e-47 188.0
Bhi06g00518 . 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 65.4 7.7e-138 488.8
Bhi11g01446 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.8 2.3e-129 460.7
Bhi06g00518 . 7 544 MAP Kinase Kinase Kinase Kinase AT4G10730 50.4 1.0e-139 495.0
Bhi09g03450 . 1 182 MAP Kinase Kinase Kinase Kinase AT4G10730 50.3 3.0e-46 184.5
Bhi06g00518 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.9e-150 530.4
Bhi11g01445 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01446 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 1 672 MAP Kinase Kinase Kinase Kinase AT1G79640 60.9 3.1e-218 755.7
Bhi11g01445 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 2.2e-216 749.6
Bhi11g01446 . 1 625 MAP Kinase Kinase Kinase Kinase AT1G79640 59.3 7.9e-206 714.5
Bhi06g00518 . 6 544 MAP Kinase Kinase Kinase Kinase AT1G79640 53.1 7.0e-154 542.0
Bhi09g03450 . 1 184 MAP Kinase Kinase Kinase Kinase AT1G79640 51.3 2.4e-45 181.4
Bhi06g00519 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00521 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00523 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00520 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00522 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00524 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00517 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00518 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi11g01445 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01447 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01446 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87814 PF00069 Pkinase 1.70E-60 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00518 Bhi_Chr06 FPKM 74.53965 79.695755 214.524796 200.648575 130.362808 128.597687 116.110382 168.481384 179.92247 160.984772