Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00524 AAAAAAAAAAAACCATTTCATTTGCATCAAATCAAAGTCGTCTCCAAGTCCATTCATAATTTTTCTGGAATTCTGGTTAAATTCCAGAAATAAAATTAATTTTCTTTTAAATTTTATTTGTTTTCTGTATTTTTAATAGCGGCGACGGCGAGAGATTCAATCACGAGAACTCGGAGTCAATAATTAGTTGGAAGCAAATTAAAAAAAGAAAAAAAAAGAGAAATTTTTTCAGAGGTCTTGGAAGCTTTGTTGGTTGTTTGCTGGTAGATGGTCTTAGAACTTAATGTGCTGAAGGCTAAAGAGATGGCATGCTTATTGACATCAACTTTTTTGGGGTTCATTGGATGAACTCGTTTTCCATTTTTCCTGATGCAGTTACGAGTTATTTACGGTGTCCTGCTGATCTGAGAAAAATGCCATCAAAATGGAAAATTCCTTACATTGATTTGAAGATTATTTCTTCAGAATATATTTTATTTAGTTTTATGTCAGTTGGGACATCTTTGGGCAAAGAAGGTTCGCTGCTGTAATGTAAAAGGAAAATTATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTATAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAACGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACGGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCATGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCCCATGGGCATGCTCCATTTTCTAAATACCCCCCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCCGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTAGATGGCCTTGATCCATTAGGGGAGCGTTTTAAGAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACGTAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAACGCTGAATTACCCTACCGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATGAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATGTAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTATTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATCACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTGCAACGCAAAGGGCGGTTTAAAGTTACTTCGGCAGAGCTTAGTCCGAAGGGTCCTATGACGGGCTCATTCAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTGCCATCAGTGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAATGACTGGCAAGAATCCAGATGTATCAGAGACGGTCACCAGTGACCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTCCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAGTTAGAGAAGCAAAAGTTGAAAAATGCCGAGTTTGAAAGACACATGATTTCTATGACAAATAAAGAGAAAACATAAAAGAAAGCTCGTAAAGTGGGTATAGATCATCCTGATGCCTTCAGTTCTTGATTATTCTTTAGCAATTCATGTGTGGCTGTCTCTGTCTGGATGATACGAGCCAATCGTTATTGTATTTGTAGTGTACTATACGTGTGATGTCAAAAGGCAGACACCAAAAATTTTGTGTTCTTTAATGTATTCCCTATGTATCTTTGTAATGCTGATCTTGTAATATATTGCGGTATCTGTGTTTTTCCCCCCCTTGCTTTCTCACAGTTCTTATAATGATATGTCAATCTGAACCTACAGTTAATATACATAATATTGAATGATATCCTTTAAACCA 2889 39.67 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNVEDLDVHTTQQRNKNNEFTFPVEGSSLETLNYPTAAASQEDGFNDLHDLESSLASFPMKPLEALKDCFDIYEDVSTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNHSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSVQCILQQNILQREEIVKLIKYLEQMTGKNPDVSETVTSDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFERHMISMTNKEKT 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11843714 11856007 + XM_039035187.1 Bhi06g00524 36863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00524 671 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Bhi06g00524 671 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g00524 671 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 669 - -
Bhi06g00524 671 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g00524 671 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 669 - -
Bhi06g00524 671 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Bhi06g00524 671 CDD STKc_OSR1_SPAK 14 277 - -
Bhi06g00524 671 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g00524 671 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Bhi06g00524 671 Coils Coil 627 661 - -
Bhi06g00524 671 MobiDBLite consensus disorder prediction 449 464 - -
Bhi06g00524 671 MobiDBLite consensus disorder prediction 437 464 - -
Bhi06g00524 671 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00524 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1320.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00522 Bhi-Chr6:11843714 Bhi06g00524 Bhi-Chr6:11843714 0 dispersed
Bhi06g00524 Bhi-Chr6:11843714 Bhi11g01445 Bhi-Chr11:41975316 0 dispersed
Bhi06g00523 Bhi-Chr6:11843714 Bhi06g00524 Bhi-Chr6:11843714 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g03449 . 1 689 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 9.3e-226 780.8
Bhi09g03448 . 1 690 MAP Kinase Kinase Kinase Kinase AT1G53165 63.6 2.3e-224 776.2
Bhi09g03450 . 1 601 MAP Kinase Kinase Kinase Kinase AT1G53165 60.5 2.7e-180 629.8
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 5.2e-67 253.4
Bhi09g03449 . 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 65.6 2.8e-230 795.8
Bhi09g03448 . 1 689 MAP Kinase Kinase Kinase Kinase AT3G15220 65.5 5.3e-229 791.6
Bhi09g03450 . 1 600 MAP Kinase Kinase Kinase Kinase AT3G15220 62.3 8.9e-184 641.3
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 2.3e-67 254.6
Bhi07g00260 . 3 840 MAP Kinase Kinase Kinase Kinase AT1G69220 58.1 1.4e-241 833.6
Bhi06g00519 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00521 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00523 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00520 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00522 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00524 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00517 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 9.7e-252 867.1
Bhi06g00518 . 1 547 MAP Kinase Kinase Kinase Kinase AT5G14720 69.2 8.8e-221 764.2
Bhi09g03450 . 1 191 MAP Kinase Kinase Kinase Kinase AT5G14720 50.5 2.6e-47 188.0
Bhi06g00518 . 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 65.4 7.7e-138 488.8
Bhi11g01446 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.8 2.3e-129 460.7
Bhi06g00518 . 7 544 MAP Kinase Kinase Kinase Kinase AT4G10730 50.4 1.0e-139 495.0
Bhi09g03450 . 1 182 MAP Kinase Kinase Kinase Kinase AT4G10730 50.3 3.0e-46 184.5
Bhi06g00518 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.9e-150 530.4
Bhi11g01445 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01446 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 1 672 MAP Kinase Kinase Kinase Kinase AT1G79640 60.9 3.1e-218 755.7
Bhi11g01445 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 2.2e-216 749.6
Bhi11g01446 . 1 625 MAP Kinase Kinase Kinase Kinase AT1G79640 59.3 7.9e-206 714.5
Bhi06g00518 . 6 544 MAP Kinase Kinase Kinase Kinase AT1G79640 53.1 7.0e-154 542.0
Bhi09g03450 . 1 184 MAP Kinase Kinase Kinase Kinase AT1G79640 51.3 2.4e-45 181.4
Bhi06g00519 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00521 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00523 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00520 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00522 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00524 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00517 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00518 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi11g01445 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01447 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01446 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87820 PF00069 Pkinase 2.80E-60 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00524 Bhi_Chr06 FPKM 1.29671 2.016632 1.610699 1.760942 1.608473 1.453934 1.904709 2.903654 2.58922 3.214357