Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00600 GACAGGAGTGGGAGGTTACGCTGCTCTGTGAATCCAGCCTCACGCGGTGCCCTCCAATCTCTAGGGGCAGTGGACACCAAGCCTTCGCCCGAAGCCCAAGGCCCGACTCCCTACTTGGAAACGGACAGGCCAGACAGACTTCTTGAGAGGACCCTACCATCCGGGCCGAACCAGCCTCCAACCACATTATTGCCTCCGTTTGGATTACAAGCTCACACTACCGAGCTCGGCGTTTGTAAGGAGTTGGCATGCCATTTATAAAGAAGATGCAGAGTTGTCATTTTATCGATGTGGTACAACATTTCAATCAAATTCTGTTTCAAAAACTTAAATACTCTTTTCATATTTCATATTTATATGAATATGATATGTTGAAGAATATTACCTTTTTTATTTTCTTCTGGTTTCCCACGGTCCAAGCAGGAAAAGAAAAAACCAGAACGATTCATTGCCCATTACCCGAAATTGTAGGACTCGACGTGCAATCAGCCATGGATGAACAAAAATCAACCGCCCACTATATTCAAACTCCTCTCAACTCCCATTTACGCCACTATAAATCTCTCCCCCCCAATCAACCTTCACTTCCATTATCCAGTTCAATTCCTTCTGTAAAAAACTACAATTATTATCAATGCCGTCCAACTCCTTCTTCACACTTTTCCTTCTCACTACCTCCTTCTCCGCCGTCGCTTCTTTTGAGTTCCAAGTCGGTGGCGTCAAAGGCTGGGTAGTTCCGCCGGCTAACGACAGCAAAATCTACAACGATTGGGCCTCAGAAAACAGATTCAAAGCCGGTGACACCGTCCGTTTCCGGTACAAGAAGGACTCGGTGATGGAAGTGACAGAAGAAGAGTATAAAAGATGCAATTCCACACAACCAAATTTCTTCTCCAACACCGGCAACACCGTCTTCCAATTCAGACGATCAGGAACTTTCTACTTCATCAGCGGCGCTAATGGCCACTGCGAAAGAGGGCAGAGGATGATCGTGAAGGTCATGGCCGATGATGAATCTGCTTCTTCCTCCGATTCTGACAAATCCTCTGCTTCGAGCACTCCAATCTCAACGATAGGGTTTCTAAAATTCGTCTCCGTTCCGTTGGCTCTGTCCATTCTGTTCGAATCTGGGATTTGTTAGAGCAATAGCGTCTTCATTTTTTTCGTCGTCTTCAGAATTTCGTCTTATTTCTTATTGGATGTGTTTCTTTTGTTTTA 1218 45.24 MPSNSFFTLFLLTTSFSAVASFEFQVGGVKGWVVPPANDSKIYNDWASENRFKAGDTVRFRYKKDSVMEVTEEEYKRCNSTQPNFFSNTGNTVFQFRRSGTFYFISGANGHCERGQRMIVKVMADDESASSSDSDKSSASSTPISTIGFLKFVSVPLALSILFESGIC 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13580571 13581878 + XM_039033801.1 Bhi06g00600 36939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00600 168 Gene3D - 21 129 IPR008972 -
Bhi06g00600 168 Pfam Plastocyanin-like domain 41 116 IPR003245 GO:0009055
Bhi06g00600 168 PANTHER BLUE COPPER PROTEIN 8 132 IPR039391 GO:0009055
Bhi06g00600 168 PANTHER EARLY NODULIN-LIKE PROTEIN 21 8 132 - -
Bhi06g00600 168 ProSiteProfiles Phytocyanin domain profile. 22 124 IPR003245 GO:0009055
Bhi06g00600 168 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Bhi06g00600 168 CDD OsENODL1_like 22 123 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00600 - - - bhj:120080130 246.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00600 Bhi-Chr6:13580571 Bhi08g01036 Bhi-Chr8:33827602 2.93E-42 dispersed
Bhi06g00600 Bhi-Chr6:13580571 Bhi06g00602 Bhi-Chr6:13627436 3.38E-87 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00600 . 16 131 Phytocyanin Superfamily AT1G48940 56.4 1.6e-36 150.2
Bhi11g02902 . 13 165 Phytocyanin Superfamily AT3G01070 54.8 1.6e-38 156.8
Bhi04g00052 . 7 171 Phytocyanin Superfamily AT2G25060 55.7 7.3e-45 177.9
Bhi11g02902 . 12 177 Phytocyanin Superfamily AT5G15350 53.9 1.0e-48 190.7
Bhi04g00052 . 16 171 Phytocyanin Superfamily AT4G31840 56.4 4.9e-46 181.8
Bhi06g00600 . 16 131 Phytocyanin Superfamily AT1G48940 56.4 1.6e-36 150.2
Bhi04g00052 . 9 172 Phytocyanin Superfamily AT5G25090 50.3 8.0e-39 157.9
Bhi04g00052 . 7 171 Phytocyanin Superfamily AT2G25060 55.7 7.3e-45 177.9
Bhi04g00052 . 16 171 Phytocyanin Superfamily AT4G31840 56.4 4.9e-46 181.8
Bhi11g02902 . 13 165 Phytocyanin Superfamily AT3G01070 54.8 1.6e-38 156.8
Bhi11g02902 . 12 177 Phytocyanin Superfamily AT5G15350 53.9 1.0e-48 190.7
Bhi02g01667 . 29 161 Phytocyanin Superfamily AT2G27035 52.2 1.6e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00600 Bhi_Chr06 FPKM 4.138786 4.886007 0.629138 0.497792 12.943886 11.753984 13.452179 2.458158 1.964129 2.208194