Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00947 AAATATTAATTTGAAATTCTGACTTCTGTTTTCCATCTCTCTTTGGTACGAACCCCTACTTTTGCTTCTGTTCTCTTATCAGTCATCAACCACTACCTCTTTCTTCTCACTTTCCCCACTCTCCCATTTCCACCTCTTTCGATCACTCGCATTTTCATCTTCCTACTTCTTCATCACTTCCTCAATCTCAATTTCCATCGAGTCCTTGTTGGGGCCTTCTGCTTCCAAAAGGGTCCGAGCATAAATGGAATCGGAGGATGAGCTCGACATGCACGATGCCCACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGAGACGACGATGCTGCTGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGGCACCAGCAAAACTATGTAATCTTGGCCGAGGCAGATATACAGCAGCGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCGAGCATCTTGCTCCGATATTACAACTGGAGTGTCAGTAAGGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAATTTTGCGACATTCCAATGAAGCAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGTCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGACAAAAAGAAGTACTTCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTAACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCGTGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATTCATGTAATCGCTATGAAACTGCAAAGCAGGAGGGAGTGTATGATGATGCCGAGAAGCGCAGAGAGATGGCCAAGAATTCTTTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGGTATGCTTTTTATTTCCTGAGACTTTTGAACTTCTGTTCGTTTATTAGGTGCTGGTTATTCCC 1483 43.22 MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYVILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPILRHSNEAELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYSCNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSVCFLFPETFELLFVY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26084715 26130172 + XM_039034149.1 Bhi06g00947 37286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00947 407 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 392 IPR031127 GO:0004842|GO:0016567
Bhi06g00947 407 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Bhi06g00947 407 SUPERFAMILY RING/U-box 296 344 - -
Bhi06g00947 407 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Bhi06g00947 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Bhi06g00947 407 MobiDBLite consensus disorder prediction 1 56 - -
Bhi06g00947 407 SUPERFAMILY RING/U-box 141 224 - -
Bhi06g00947 407 Pfam Zinc finger, C3HC4 type (RING finger) 146 181 IPR018957 GO:0046872
Bhi06g00947 407 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 30 392 - -
Bhi06g00947 407 MobiDBLite consensus disorder prediction 1 58 - -
Bhi06g00947 407 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Bhi06g00947 407 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Bhi06g00947 407 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 -
Bhi06g00947 407 SUPERFAMILY RING/U-box 216 284 - -
Bhi06g00947 407 SMART ibrneu5 281 351 IPR002867 -
Bhi06g00947 407 SMART ibrneu5 215 277 IPR002867 -
Bhi06g00947 407 Gene3D - 273 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02053 Bhi-Chr4:54773226 Bhi06g00947 Bhi-Chr6:26084715 0 dispersed
Bhi06g00947 Bhi-Chr6:26084715 Bhi06g00949 Bhi-Chr6:26088382 0 dispersed
Bhi06g00947 Bhi-Chr6:26084715 Bhi06g00948 Bhi-Chr6:26085170 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00947 K11968 - csv:101218052 760.755