Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00948 ACTCTCGAACTTTTTGCGTTTCTTCATGGGCATTTCATAATTTGTAGTTTTGCGAATTCTGGTGTTTGTTGATTGCTCTGTTCTATTCTTTACCAATCTGAATTTCCAGTTCTTTTTTATTCCTCCGTTTTTCTTTCCATATTCGAGTATGAGATGGGGATTGTTTTGTCTCTTTCTAGAAATGCGTAGCTAGAGAATTTTTATCATTCTGTTGATGATGATAGCCACATTGGTCATGATAATTTTTATCATTCTCTTCATATGGGTTTGTTTCGTTTTGATGGTTTAATTGGGTACTCAAGTGCAATTGAACTCTTGAAGTTTGTTATTTTTAGTTATGTATCTTGAAATGTGATACTTCTCGGGAAGAATTAGAGTGTTCCATGTATTGTCGAGGTTGAGTTTGAAGCATAATGGCTGGTCTGGTTTGTTGTAGAGCGCAGCAGCTGAGCCTGCTGGCAGTGGCTTATCTAACTCTTGCAAAATAGTATTAATAACAAGAGAGAACCAAAAACGAATTTTTTTTCTGCCAGGGAATAAACTTTGTGGTTTATGCTCTTGGAAGCTTTCCTTCTCTACAGGGCTTGTTTTGGACTAGATTGGCCGGTAATCTGGTGGTTTAGGCGATTGTAGAGCCAAGATTCAGGAACTGTTGGTGGGTTTTGTGGACTAATGCTTGTGGTGCTCTCCTCTAGAACATTTGCTAGTAGGAAAGAGAGAGAAAAGAAAAAGAAAAGAAGAAAAGAAAAGAAATGAGGGTGGGTGAGTAGGCAGGAGAGAGTGGCTTTGGGAAGTTATTGTTGCTTTATTTCCTCAAAGAGACAGAGGGATTTCCTTGATCTCATTTTTTGAATCAAAGGCTTTGGCATCAAGTGGAGAAGATGGATCCAAGGCTTCATTTCCTCATACAATTTCTCCAATATTATAAATGGCAATTCTGGTGCAAAGATTATGGCCTCAAGGGGTCTTTGGAAAGCAAAACTATGTAATCTTGGCCGAGGCAGATATACAGCAGCGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCGAGCATCTTGCTCCGATATTACAACTGGAGTGTCAGTAAGGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAATTTTGCGACATTCCAATGAAGCAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGTCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGACAAAAAGAAGTACTTCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTAACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCGTGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATTCATGTAATCGCTATGAAACTGCAAAGCAGGAGGGAGTGTATGATGATGCCGAGAAGCGCAGAGAGATGGCCAAGAATTCTTTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGGTATGCTTTTTATTTCCTGAGACTTTTGAACTTCTGTTCGTTTATTAGGTGCTGGTTATTCCC 2017 39.96 MAILVQRLWPQGVFGKQNYVILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPILRHSNEAELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYSCNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSVCFLFPETFELLFVY 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26085170 26130172 + XM_039034151.1 Bhi06g00948 37287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00948 357 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 342 - -
Bhi06g00948 357 SUPERFAMILY RING/U-box 246 294 - -
Bhi06g00948 357 Pfam Zinc finger, C3HC4 type (RING finger) 96 131 IPR018957 GO:0046872
Bhi06g00948 357 ProSiteProfiles Zinc finger RING-type profile. 96 140 IPR001841 -
Bhi06g00948 357 SUPERFAMILY RING/U-box 166 234 - -
Bhi06g00948 357 SUPERFAMILY RING/U-box 91 177 - -
Bhi06g00948 357 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 342 IPR031127 GO:0004842|GO:0016567
Bhi06g00948 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 176 IPR013083 -
Bhi06g00948 357 Gene3D - 223 344 - -
Bhi06g00948 357 CDD RING-HC_RBR_TRIAD1_like 96 146 - -
Bhi06g00948 357 SMART ibrneu5 231 301 IPR002867 -
Bhi06g00948 357 SMART ibrneu5 165 227 IPR002867 -
Bhi06g00948 357 ProSiteProfiles TRIAD supradomain profile. 92 305 IPR044066 -
Bhi06g00948 357 Pfam IBR domain, a half RING-finger domain 244 292 IPR002867 -
Bhi06g00948 357 Pfam IBR domain, a half RING-finger domain 165 227 IPR002867 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00464 Bhi-Chr5:9830089 Bhi06g00948 Bhi-Chr6:26085170 4.40E-13 dispersed
Bhi06g00948 Bhi-Chr6:26085170 Bhi10g02043 Bhi-Chr10:51121725 2.98E-50 dispersed
Bhi06g00947 Bhi-Chr6:26084715 Bhi06g00948 Bhi-Chr6:26085170 0 tandem
Bhi06g00948 Bhi-Chr6:26085170 Bhi06g00949 Bhi-Chr6:26088382 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00948 K11968 - csv:101218052 690.649