Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00949 AAAAGCTGCCATCTTTGAATTGTGGAATAGTGAAGCGGCAACCTGGAATATTTGGTCAAGGAGTAATCTTAGTGAAGTAAAAATTGGCAATGGGCTATGCTTTTCAATGCCCTTTCCCAGTGATGGTATCAGCTCATGAAGACTCATGGCAAAACTATGTAATCTTGGCCGAGGCAGATATACAGCAGCGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCGAGCATCTTGCTCCGATATTACAACTGGAGTGTCAGTAAGGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAATTTTGCGACATTCCAATGAAGCAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGTCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGACAAAAAGAAGTACTTCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTAACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCGTGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATTCATGTAATCGCTATGAAACTGCAAAGCAGGAGGGAGTGTATGATGATGCCGAGAAGCGCAGAGAGATGGCCAAGAATTCTTTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGGTATGCTTTTTATTTCCTGAGACTTTTGAACTTCTGTTCGTTTATTAGGTGCTGGTTATTCCC 1190 41.51 MGYAFQCPFPVMVSAHEDSWQNYVILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPILRHSNEAELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYSCNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSVCFLFPETFELLFVY 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26088382 26130172 + XM_039034150.1 Bhi06g00949 37288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00949 361 Pfam Zinc finger, C3HC4 type (RING finger) 100 135 IPR018957 GO:0046872
Bhi06g00949 361 Pfam IBR domain, a half RING-finger domain 248 296 IPR002867 -
Bhi06g00949 361 Pfam IBR domain, a half RING-finger domain 169 231 IPR002867 -
Bhi06g00949 361 ProSiteProfiles TRIAD supradomain profile. 96 309 IPR044066 -
Bhi06g00949 361 SMART ibrneu5 235 305 IPR002867 -
Bhi06g00949 361 SMART ibrneu5 169 231 IPR002867 -
Bhi06g00949 361 SUPERFAMILY RING/U-box 170 238 - -
Bhi06g00949 361 Gene3D - 227 348 - -
Bhi06g00949 361 ProSiteProfiles Zinc finger RING-type profile. 100 144 IPR001841 -
Bhi06g00949 361 SUPERFAMILY RING/U-box 250 298 - -
Bhi06g00949 361 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 346 IPR031127 GO:0004842|GO:0016567
Bhi06g00949 361 SUPERFAMILY RING/U-box 95 178 - -
Bhi06g00949 361 CDD RING-HC_RBR_TRIAD1_like 100 150 - -
Bhi06g00949 361 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 346 - -
Bhi06g00949 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 181 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00949 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 690.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00947 Bhi-Chr6:26084715 Bhi06g00949 Bhi-Chr6:26088382 0 dispersed
Bhi06g00949 Bhi-Chr6:26088382 Bhi10g02043 Bhi-Chr10:51121725 4.17E-50 dispersed
Bhi06g00948 Bhi-Chr6:26085170 Bhi06g00949 Bhi-Chr6:26088382 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi10g02044 . 164 589 ARIADNE family AT4G34370 72.2 2.7e-183 639.0
Bhi10g02046 . 164 593 ARIADNE family AT4G34370 71.5 4.0e-182 635.2
Bhi10g02043 . 164 550 ARIADNE family AT4G34370 76.0 4.5e-178 621.7
Bhi10g02045 . 164 543 ARIADNE family AT4G34370 76.8 1.0e-177 620.5
Bhi10g02046 . 58 544 ARIADNE family AT2G16090 76.7 8.1e-224 773.9
Bhi10g02045 . 58 544 ARIADNE family AT2G16090 76.7 8.1e-224 773.9
Bhi10g02044 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-223 772.3
Bhi10g02043 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-223 772.3
Bhi10g02046 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02044 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02045 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02043 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02046 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi10g02044 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi10g02045 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi10g02043 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi04g02053 . 61 535 ARIADNE family AT1G05890 73.3 5.2e-217 751.5
Bhi06g00947 . 63 391 ARIADNE family AT1G05890 73.3 2.3e-156 550.1
Bhi06g00949 . 21 345 ARIADNE family AT1G05890 73.8 5.1e-156 548.9
Bhi06g00948 . 17 341 ARIADNE family AT1G05890 73.8 5.1e-156 548.9
Bhi04g02053 . 16 588 ARIADNE family AT1G65430 69.3 7.4e-245 844.0
Bhi06g00947 . 25 392 ARIADNE family AT1G65430 76.2 6.0e-178 621.7
Bhi06g00948 . 16 342 ARIADNE family AT1G65430 79.2 5.1e-169 592.0
Bhi06g00949 . 21 346 ARIADNE family AT1G65430 79.4 6.6e-169 591.7
Bhi04g02053 . 58 454 ARIADNE family AT2G31780 58.4 5.8e-144 508.4
Bhi06g00947 . 50 392 ARIADNE family AT2G31780 55.4 4.0e-121 432.6
Bhi06g00949 . 21 346 ARIADNE family AT2G31780 56.4 2.2e-119 426.8
Bhi06g00948 . 17 342 ARIADNE family AT2G31780 56.4 2.2e-119 426.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00949 Bhi_Chr06 FPKM 126.605133 129.540085 117.613091 124.449516 146.849579 151.611938 139.670258 165.048538 170.670685 168.13678