Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01092 TTCAATTAAATGTCTAATTAAAAAAAGAAAAAAACAAAAAAAAAAAAGATGAACAAACAAACCAAAACACAAAAATTAATCCATTTAATCAAAGTTACATTCTCATTATATTTTTCATTTTTAATAATAATTAATCAAATCCCATTCCCGAATCCCCTTTTTCTATCGTAGATTCATCCCTTAATCCTTAGTCTTAAAAAAAAAAAAACACGTTTTTCTTTCTTTTCTTTTGTTAGCGTTATTATTTTAATTAAACCCAGAAGAAAAACCATGGAAAAAGGGCATTTAATCTGTTAGATGTGGTGGTACTGGATACGGTTTTTCTTACATATGACATAGTTGCTCTAATTTCAAGTGATGGGGACAGAGCTTTTAAGGGTCTGCGTTGAAGAAGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTACTCTAGGGAAGGTGCACAATCATGAAAAACAAGGCAGTAATGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTTAAAGTGGGAAGTGAGGTAGAAGTTGCTAATGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTGAACTATAGACAATATGATTACTGCTCTGATGACGAGATCAATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCGAAGGGAGTCATTCGTGGGTGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCTGAAGAATCCTGCCGGCCGAACCTCGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATAAGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACCCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGGTTAATAATAGAAAGGGGGCTGATGTTACCACATTAAATGGAAAAAATGGGGATGCTGGCTTTGTTGAGGCCGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACCTTAGCATTGTTTAAAGAATATGCAGATGACTTTAAGACTCAGTATTTTAGTAAACCACTAAACGATACTGCAAAGGAACGTAGCCCATCCATGCTGCAAGAGAACGAACATTTGAAACTGTCTTTGGAAGCTATTGAGGGTGAGTATTGGCGGATGGTAGAGAAGCCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACATTAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCGGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTATACATCGGGATGTGTTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGGGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGGAAATTAGAAGAGGCTATGAGAAAGCATTTGCCTAACCTCTTTCAAGAACAACCCGATTTACTCCATAAACTGGTCACACAACTTTCTCCGTCCATATTGAAAATTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAATAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGATTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGGGAACAGGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAAAATACTTTGGATAACTTAAGATGGAATAATGTTTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGGCTCGTGTTGAGATGGAGAGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGACGATGAAGATGGAGAGCAATTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGCCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGACAGGATCTTGGCCTGGCGCTCAGTACATCCAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCATGGGAATCCTCAATGGAAAGAATTCTTAAGGCAATCTTCATTATTACCATCTCTAACTGCTTTTGACAGCCCTTCTCATAATGCCAAAAAGTTATGTGAAGTTACTGGTTCTTTTTCAGAAGTTAAGAAGGTACTTTCCACAGTTAACGAATCTGGAAAGGAAATTGAGCAGAAAAATCATAAAATTGAGGTGAAAAAAGAAAATCATGACCTCATGGCAACCAATTCTAGACATGCAGATTCACAGTCCTGTAAGGAAGATACAAAGGCTCTGAATTTGGTAGAAGTGAAAAATACAACGGATAAAATGTGTCCTGAAAATGTCATACTTTTAAGTGATGATGAAGGTGATGAGCATAACAAGACGATTTCGAATGGTTTAGCTGAAAGTTCATCAGTAAAGCCGCCGGGAAATTTAGATCGGTTCACTGAGATTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATACCATTTTGCACACTCCTGCGACTGATGCAACGACCATGGGAGAAAAGGAGGTCAACTTGTTGATTGAAAAAAGATTGAATAATTGCCAATCGAGCATTGTACCTTTAAATAGTAAACAGACTCAAAACATTAACTTGTCAGTTAGAAATGCAGCTGATGCCATTCGGAACAATACCTGCTTAGATGCAGGATTAGGTCATAGCAATAGAGTATTTCCAGCGTCAACAGAAGCTGAATCTCAAAAACCACAGTCATGTGGCTCTGGAAAACTGAATGAGGGTAAGCATGGAAATGTGGGAACAAGTGCTACCTCTTGTGTGTTAGACCCTAGTAGAACTGCAAACTTATCTTGCAACCAAGCTAATATGGATAGATTCAAGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTTGAGCTTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTCGTGTTACTATGTTTCTGAAATTCTTGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATCACGAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTACACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGTCCCTATTCTCGGCCTCAAGTACATAGTCCCCAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAAACGGAAGGAACCACGGGGTTGATCCTAGGCCAGCTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTACACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGCATGTTAGCTCGACTTCTTGACGAAGAGATTCAAAGTCATCGAAGATGATTCATTGCTCAGTGTTTTGATTTGACTCAACTTAGGGCGGCATTAATCGACTTCTGTAAATACAGAGTTGTTGGTATCAGTATCAGGCCCCTTTTTTTTTGTACATGTTTCTTTTAGCCTGGTGATTCTAACTTTTGGAGGAAAAGGAGGGGAAGTGGGCATTCCTCCAAATTAAAATTTTATTAGGTTCTTACAGTGGGAAAATTTATTGGGGGTGGATACAGATGTTAATGTGACTTAGTGTTCACTGTCTGTTTTGGATTAGAGTGTAAGGTAATACCAAATACACATACATTCTCTCAAACTTACTCTTGGAATTATTTAAAGGTTTAGTGTAGAAAAGAGAATCTTTTGTTTCAAATTCAA 4434 40.17 MGTELLRVCVEEDSDDFPSVPPGFESYISFTLGKVHNHEKQGSNVPVSLPTVSESQPVKVGSEVEVANVAKVTRSLRRKPCVNYRQYDYCSDDEINSTKCLDQNFSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNPRVCSQMRRKRRRVNNRKGADVTTLNGKNGDAGFVEAERFGFDPGPDFTLALFKEYADDFKTQYFSKPLNDTAKERSPSMLQENEHLKLSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKIEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGILARAFKARVEMESARRNLPCSSSQTMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSHGNPQWKEFLRQSSLLPSLTAFDSPSHNAKKLCEVTGSFSEVKKVLSTVNESGKEIEQKNHKIEVKKENHDLMATNSRHADSQSCKEDTKALNLVEVKNTTDKMCPENVILLSDDEGDEHNKTISNGLAESSSVKPPGNLDRFTEIDSKASLCNYNENTILHTPATDATTMGEKEVNLLIEKRLNNCQSSIVPLNSKQTQNINLSVRNAADAIRNNTCLDAGLGHSNRVFPASTEAESQKPQSCGSGKLNEGKHGNVGTSATSCVLDPSRTANLSCNQANMDRFKRQKGPRMAKVVRRINCNVELLEYGIVLSGKSWSNSQAIFPKGFKSRVKFISVLDPSTSCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEITKQHKLGRTNLPPLQPPGSLDGLEMFGFTTPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTNGRNHGVDPRPAGVDIVLRGLLKKANLEELNSLYTLLNDNRPTVDQGMLARLLDEEIQSHRR 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30926652 30938726 - XM_039035265.1 Bhi06g01092 37431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01092 1236 MobiDBLite consensus disorder prediction 821 845 - -
Bhi06g01092 1236 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Bhi06g01092 1236 ProSiteProfiles FYR domain FYRC motif profile. 1060 1150 IPR003889 GO:0005634
Bhi06g01092 1236 SMART cupin_9 360 526 IPR003347 -
Bhi06g01092 1236 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Bhi06g01092 1236 SUPERFAMILY Clavaminate synthase-like 361 553 - -
Bhi06g01092 1236 ProSiteProfiles JmjC domain profile. 360 526 IPR003347 -
Bhi06g01092 1236 SMART JmjN_1 144 185 IPR003349 -
Bhi06g01092 1236 Gene3D - 1005 1144 - -
Bhi06g01092 1236 SMART fyrc_3 1064 1158 IPR003889 GO:0005634
Bhi06g01092 1236 MobiDBLite consensus disorder prediction 937 959 - -
Bhi06g01092 1236 SMART fyrn_3 1014 1058 IPR003888 GO:0005634
Bhi06g01092 1236 Pfam F/Y rich C-terminus 1062 1146 IPR003889 GO:0005634
Bhi06g01092 1236 Pfam F/Y-rich N-terminus 1008 1055 IPR003888 GO:0005634
Bhi06g01092 1236 PANTHER LYSINE-SPECIFIC DEMETHYLASE 78 702 - -
Bhi06g01092 1236 PANTHER LYSINE-SPECIFIC DEMETHYLASE 973 1233 - -
Bhi06g01092 1236 MobiDBLite consensus disorder prediction 937 951 - -
Bhi06g01092 1236 Pfam jmjN domain 146 179 IPR003349 -
Bhi06g01092 1236 ProSiteProfiles FYR domain FYRN motif profile. 1000 1058 IPR003888 GO:0005634
Bhi06g01092 1236 Gene3D Cupin 130 510 - -
Bhi06g01092 1236 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Bhi06g01092 1236 PANTHER JUMONJI 14-RELATED 78 702 - -
Bhi06g01092 1236 PANTHER JUMONJI 14-RELATED 973 1233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01092 - - - csv:101208186 2263.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01092 Bhi-Chr6:30926652 Bhi06g01094 Bhi-Chr6:30926652 0 dispersed
Bhi06g01091 Bhi-Chr6:30926652 Bhi06g01092 Bhi-Chr6:30926652 0 tandem
Bhi06g01092 Bhi-Chr6:30926652 Bhi06g01093 Bhi-Chr6:30926652 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g569 . . . . . Bpe09g00666 . . . . Cma05g01230 . Car05g01154 . . . Cpe11g01012 . . . . . . . Cla02g01667 Cam02g1754 Cec02g1775 Cco02g1821 Clacu02g1738 Cmu02g1689 Cre02g2011 Cone10ag0648 Cone3ag0677 . . . Csa02g00276 . Cme05g01823 . . . . . . . . . Cmo05g01257 . . . . . . . Bhi06g01092 . . . . . . . . . . . . . Lsi11g00410 . Chy05g01229 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01093 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01094 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01095 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01091 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01092 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi08g00942 . 64 955 JUMONJI Transcription Factor Family AT4G20400 51.1 5.2e-245 845.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1376 PF02373 JmjC 3.50E-44 CL0029 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01092 Bhi_Chr06 FPKM 0.635915 2.043619 1.520373 1.200901 1.463007 0.809413 0.703718 1.547116 1.1415 1.205307