Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01253 AGAAATTGTACAATGGGTGCTTGGATTTTTGCATTACAAATTTCCCAAACTCCTCAGCTTTGCAAGTTTACAAACTGCCACCCAAAAAAAATTGTATTTTTAATAACAAATTGGTCCCTTTTTTTCACTTGGGGTCCTTCCTTTATGCTCTCTTTTCACTTTCCTCACTGTAAATCTCTCTCTCTCTCTTCTGGGTTTTGGTTTCTGAAAAGATAAAAAAAGGACCCATAAAAGAGTTTGAGAGAGAGAGTTCTCTCAGCCTTCAACCCTCATGATGGGATCTTTAGTTGTGGCGGAATACAATGTGTCCTTTATTGGTTCAAAAATGTTGGTCTTTTGGTGGTAATGTGGAGGCTTGAGCACTTTCACCATGGCTGCTGATTCTTCCTTTGATGGTGCTATTTTTGACTCGCCAAAATGTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTATATGAAATTTCAAAGTCTCATGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGACATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTCATATCCGAAAAGAAGTCATCAGTGCCTGAGGTTTTGAAAAACCTTGAGCCACAGTCTCCTTCGGGTGGCCATAAAACTACCAAAAGGCAGAGGAAATCTGAGCATCTAGCTCAACTTTCTGTTCCTACAAGTGACTTTCCAACCAGTAGTTCTCATAATGATTCGGGTCCTACGGCTTGCTGCAAAAACTTGGCTTGTCGAGCAACTCTAAATCCAGAAGATGCGTTTTGTAGAAGGTGTTCATGCTGCATCTGTCGTCAGTATGATGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCATTTCAAGGAGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCAGGAATTTCAAAAGCTGGACGAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGCAGAAAACAACTAGTTCATGCAAAAGATACGAGAAGGGTGGACATACTGTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCGTGGAACTGAAAAGTATAAAGTACTTTATCAGATTGTTGATGATTCTGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCCGGTGTACCGGTAAAGATGGGTAGAGGTATCGTAAACAGGCTTTCATCTGGACCCGAAGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTGGACTCGATGATCTCCAGCAAATCATTGCATCTTTCGCCTAATCCTGACATTCAAGATGCAAATTTTGTTCCTGCAAACATGGTTATATTCGAAGATGTTCAGTCAACATCCCTCACTCTGGTTTTAAGTTGTGAAAATGGATCCTCAGAGAACCAGGTCGGCTTCACCTTATGGCATCGTAAGGCAGATGATGCAGATTACCCGGCGGAACCAACACGTATTCTACGACAACCGAAGGCAAGGTGTGTTGTGATGGGACTATCACCTGCTACTAAGTATCATTTCAAAATTGTTCTGTTTGAGGGGACAAGGGAGTTGAGGGAGTTTGAAGTTCAGTTCTCAACAATTAGGGTGGTAGAAGAGAACCCAGGCTGTTTAGAAATTGAGAGAAGCCAAAGCCACTTTACCAACTGTAGTGACCTTTCTAATCCGTCTTCAGTTGAAGACGAAACTACCGACATTCTTCCCTATGGTGATCGAACTGATAACCTAGGAAAAAACTCCACTGCCTATTCAAAGGGCACTGAAATGCTTTCCTCGGCTATTTTATCCTCTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCAGGTACAGTTTCTGTGCTAGATGAGGCAAATGGTGCAGGAATGGTAGGTTTGATTCCCAACTCTGTTGCATCAAAGCTCGAGAACAGGCATGGTCCAAGTGTCCCAAAACTCAACACTGATAATCAGTTAAACGCCCTTGTTCGATGTGGAATGGAGTGCCAGCCATTTGTTGGCTGTTCTGAAGATGGCTTGCCTATTACTCCCTGCAAGATTGAAGTGTTAAAGGACAGTCTTGGTAGAGGTGAGAGACCAAAATCCGGCTGCAAAGACCTCGACAATAGGACTCGAAAAGGAGGGGAACCCCAAGATGGTGGCACGTCAAAGATGCGAACTGGGGAAAGACAGGATGACAAATGTGCTGAAAATGGTGTTTCAGATCGGGATTTCGAACATTATGTCAAGGTAATTAGATGGTTAGAGTGTGAGGGTCATATCGAAAAAAATTTCAGGCAGAAGTTTCTCACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAGGATTGTGAAGGTGTTTGTTGATACCTTTATTGGAGATCCAGCATCTCTTGCAGAACAGCTTGTAGATACTTTTTCAGAGTGCATTTCGAGCAAAAAACCAACGACTACTCCGCCTGGGTTCTGCATGAAGTTGTGGCACTGATTAACCTTCTCTTGCATTCTGCTATGAATTTATAATCCAAACGCGTTGAGAGGTATAATGGTAGCAATTCTTTGGATGTCAAAAATGTATTTTTAGTTCAGACTCGAACATTTCTGTTCATCATACTTGTGACCATGTAAATATTGGTATTTTTCATTTCATCATATGATCTGGTGGATTTGGTTATAATGTGAGAGGATCAATTTCTTGAAA 2788 42.0 MAADSSFDGAIFDSPKCSKLTMQEKRELVYEISKSHGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKKSSVPEVLKNLEPQSPSGGHKTTKRQRKSEHLAQLSVPTSDFPTSSSHNDSGPTACCKNLACRATLNPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGRSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLRGTEKYKVLYQIVDDSVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMISSKSLHLSPNPDIQDANFVPANMVIFEDVQSTSLTLVLSCENGSSENQVGFTLWHRKADDADYPAEPTRILRQPKARCVVMGLSPATKYHFKIVLFEGTRELREFEVQFSTIRVVEENPGCLEIERSQSHFTNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYSKGTEMLSSAILSSDAFNLSDNGEEGTPAGTVSVLDEANGAGMVGLIPNSVASKLENRHGPSVPKLNTDNQLNALVRCGMECQPFVGCSEDGLPITPCKIEVLKDSLGRGERPKSGCKDLDNRTRKGGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVRIVKVFVDTFIGDPASLAEQLVDTFSECISSKKPTTTPPGFCMKLWH 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37020501 37025171 - XM_039034407.1 Bhi06g01253 37592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01253 734 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 734 IPR044514 GO:0010048|GO:0040029
Bhi06g01253 734 ProSiteProfiles Fibronectin type-III domain profile. 344 442 IPR003961 GO:0005515
Bhi06g01253 734 MobiDBLite consensus disorder prediction 601 641 - -
Bhi06g01253 734 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
Bhi06g01253 734 MobiDBLite consensus disorder prediction 90 131 - -
Bhi06g01253 734 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 734 - -
Bhi06g01253 734 MobiDBLite consensus disorder prediction 115 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01253 - - - csv:101222501 1359.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00750 Bhi-Chr2:15007758 Bhi06g01253 Bhi-Chr6:37020501 0 dispersed
Bhi06g01253 Bhi-Chr6:37020501 Bhi06g01931 Bhi-Chr6:53713096 2.72E-22 dispersed
Bhi06g01253 Bhi-Chr6:37020501 Bhi06g01254 Bhi-Chr6:37020501 0 tandem
Bhi04g01391 Bhi-Chr4:35024334 Bhi06g01253 Bhi-Chr6:37020501 4.91E-16 transposed
Bhi02g00749 Bhi-Chr2:15007758 Bhi06g01253 Bhi-Chr6:37020501 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01253 . 4 471 PHD Gene Family AT4G30200 53.0 9.6e-129 458.4
Bhi02g00749 . 2 456 PHD Gene Family AT4G30200 53.3 2.8e-128 456.8
Bhi02g00750 CCT 2 456 PHD Gene Family AT4G30200 53.3 2.8e-128 456.8
Bhi06g01254 CCT 1 450 PHD Gene Family AT4G30200 52.7 4.6e-123 439.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01253 Bhi_Chr06 FPKM 59.070026 60.161133 68.528992 74.343414 38.193039 38.925678 38.151764 23.30117 23.030401 23.977453