Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01503 TGTAAAGAAAACCACCAATCCTTTCACCAAAAACTTCCTTCTTGGCTAAGCCATGGAATTTGAAGAAGCCCCTCTCTTGCAAAAAATTAGTGCTCTTTACCATCAAATCTCAAGCCTCACTAGCCTCAACCCTTCTAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCTCCACCTGCCCCAGCTGGCTTTGATATTGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGGGCTCATCTCATTCGCCTTTGTGCTAAAGCTGAGGCTCTTCTTGAACTTCATTTCTCTTCCATTTTGGCTTCTTCATTTCGTAATCCTATTTCTAACTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTTTCTTTACTTGAGTTTGATATTCTTCGATCTCATTGTCGTCGTGTCCCGGCTAGCATCGCGTTTCTTGGCTCCGGCCCCCTCCCGCTCTCCTCCATTGTCATGGCGTCCATTCATCTTAAGGGTACTATTTTCCACAACTTTGACCTTGATCCAACTGCAAACTCCATGGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTTCACACAACAGATGTAATGAATGTAACAAATGGATTAAAAGACTATGAAGTTGTGTTTTTAGCAGCATTAGTGGGACTAGAAGAGGAAGAAAAAGGAAGAGTTTTAAAGCATTTGGGGAAACATATGGCAGCTGGTGCTTATTTAATGCTAAGAAGTGCTCATGGAGCAAGAGCATTTTTGTACCCTGTTGTTGATATTTGTGACGTTGAAGCTTCTGGATTTGAGATTTTGTCTGTGTTTCATCCCACTGATGAAGTTATAAACTCTGTTGTAATTGCAAGAAAGAAAGCCCTGTTTGATCGAAACTCGGTTGAGGATGAGGATGACGACGACAACGCCGCCGAGAAACGAGGTATTTTAGTTGATACTTCATCTATTGTGTTGGCTGAGAAATGCTCTGGGTTTAATGGTTTTAGTCCTATGGTTGAAGAACAACTTTCTTGAAGTTGTTATTGTACTTTTGCATTTAATTTTCATTCACCCACCATAAATCTATATGTTTGGTTAAGTTCTTTTGTTTTGCTTGTTTTGTGTTGTGGAAAGTTTTTGACTTTCTTTTGTTTGTGTAACTATAGATCAAATTGTTTCAATAAAATTATGAGACGGAAAAAGAGTTATACACTTGTCTTTTAGCTTAAA 1234 39.3 MEFEEAPLLQKISALYHQISSLTSLNPSKNVDTLFTQLVLTCSPPAPAGFDIASLSQPLQAMRAHLIRLCAKAEALLELHFSSILASSFRNPISNLSIFPYYSNYLKLSLLEFDILRSHCRRVPASIAFLGSGPLPLSSIVMASIHLKGTIFHNFDLDPTANSMASQLVCSDPDLSQRMIFHTTDVMNVTNGLKDYEVVFLAALVGLEEEEKGRVLKHLGKHMAAGAYLMLRSAHGARAFLYPVVDICDVEASGFEILSVFHPTDEVINSVVIARKKALFDRNSVEDEDDDDNAAEKRGILVDTSSIVLAEKCSGFNGFSPMVEEQLS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44982584 44984575 + XM_039034636.1 Bhi06g01503 37842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01503 328 Pfam Nicotianamine synthase protein 5 278 IPR004298 GO:0030410|GO:0030418
Bhi06g01503 328 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 281 IPR004298 GO:0030410|GO:0030418
Bhi06g01503 328 Gene3D Vaccinia Virus protein VP39 8 278 IPR029063 -
Bhi06g01503 328 PANTHER NICOTIANAMINE SYNTHASE 3 4 279 IPR004298 GO:0030410|GO:0030418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01503 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101203651 536.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g02191 Bhi-Chr2:59590460 Bhi06g01503 Bhi-Chr6:44982584 1.84E-129 dispersed
Bhi06g01502 Bhi-Chr6:44916529 Bhi06g01503 Bhi-Chr6:44982584 1.62E-116 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g02191 CCT 1 310 Nicotianamine Synthase Gene Family AT1G09240 54.3 1.4e-91 334.0
Bhi06g01503 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 60.3 1.6e-90 330.5
Bhi06g01502 CCT 1 276 Nicotianamine Synthase Gene Family AT1G09240 59.9 3.8e-89 325.9
Bhi02g00770 . 16 281 Nicotianamine Synthase Gene Family AT1G09240 55.0 3.1e-75 279.6
Bhi02g02191 CCT 3 307 Nicotianamine Synthase Gene Family AT1G56430 55.6 7.3e-96 348.2
Bhi06g01503 . 4 328 Nicotianamine Synthase Gene Family AT1G56430 53.7 1.7e-92 337.0
Bhi06g01502 CCT 3 276 Nicotianamine Synthase Gene Family AT1G56430 60.7 1.3e-89 327.4
Bhi02g00770 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 55.1 3.6e-79 292.7
Bhi06g01502 CCT 1 276 Nicotianamine Synthase Gene Family AT5G04950 58.1 1.7e-89 327.0
Bhi02g02191 CCT 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.1 1.1e-88 324.3
Bhi06g01503 . 8 276 Nicotianamine Synthase Gene Family AT5G04950 59.8 1.1e-88 324.3
Bhi02g00770 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 51.5 8.6e-73 271.6
Bhi06g01503 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 58.1 5.0e-89 325.5
Bhi02g02191 CCT 1 273 Nicotianamine Synthase Gene Family AT5G56080 56.0 6.5e-89 325.1
Bhi06g01502 CCT 1 276 Nicotianamine Synthase Gene Family AT5G56080 57.6 3.2e-88 322.8
Bhi02g00770 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.7 2.8e-71 266.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01503 Bhi_Chr06 FPKM 0.311859 0.0 3.444564 2.708094 0.774471 0.644553 1.221124 9.091063 9.632585 9.36428