Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01583 CAAAAGAGAGAGAGAGAGAGAGAGAGACTATGTTTGGCTTCCTTCTTACAAAATTAGAGTTTGTGTTGAAAACTTCGAACTTTTTTGCATTAAACAAATGTTGGATTTGAACCACACACACATCGACTATGGTAAAATGCGCTTGCTTTTCCAATGTTCATACTAATTTATTCTGTCCCCCAAGTTTGCAAGTCAACTCGATCTCGGTTTAATATTAAAATGGATCAACCAAGGAAACGCAAAGGTAAAAAAGTAGGTGTAAAGGAAAGGGACCGTTGGTGCTTGATCTGAACAGAATGGAAAAGAGTCAGTGAGGCATATGTATGAATGATGTTACGAAATATCCAAAATAGAAAAAAAGTAAAAAAGAAAAATGGTAAGTGGGGGGCACTGGGATATAGTCTGAAGCTCTGGGGTAAATGAACAGAAAAAGTAAAGAGTTGGTAGTTGCAGTAAAAGCTTAAACCGTACCCAAAAAAAAAAGAAAAGAAAAGAAAAATCAGGTGCAGGTATTTAGCTTCAGAGTCCAACTCTTTGTGTGTCTGATAAATTTCCTTTTGTTTTGTTTTCCCTTATTAAATATTTTAGTTGCCTTTATTTTTATGGATTTCCGTAGAGATGTCAGAGACAAGGGGTGGCAGGCAGAAGCAGAAGATGCAGAGAGTTGCAGTCATAATATGATCAGAGAGAAAGAGAGAACTCAATGGCAAGAGCTGGAGCACCAAGCCCTGATCTTCAAGTACATGGTCTCCGGCATCCCCGTCCCTCCTGATCTGCTTTACACCATTAAAAGAACCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGCAGTTGGATGGAACTACGTGCAGATGGGTTCGGGGAGGAAAATCGATCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAAAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAATACTGTGAAAGACATATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACTCTAATCCATCCACCCCACCCATCTCATCCATCACCCACAACTCCTCCACTCTCTCCTCTTCTCATTCCTTTGGTTCACTCACCAACTCTGAAACTCATCCCCATCCCCACCCTTTTCTCTATCATCATGCCTCTGCTTCTTCTGCCCATCCATCCTTGCTTCCAGATTACAGAAGAAATAGGAATGTTTATGGGGGGAAGGAAGAAGATGTTGATCAGCATCCCTTTGTGAGGGAACAACATTCTGGTAACATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATCCCTGGCAGCTAACTCCTCTGACAATGAGCTGCTCTTCCTCATCCTCCAGATACAAGAACGGCTCTGCTTTACAAGGCGACTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAAATGGAAAGAGATGAACCACAGAAGACTATGCATCATTTTTTTGATGAATGGTCTCCTAAAGAGTCAGACAGAGAGTCTTGGGTTGATTTGGATGATAAGTCATCAAATACTGGCTCAGTTTGTGCAACTCGGCTTTCAATGTCTATTCCCAACCATGACTTCTCCTCCATCTTCACTTCCAATAAGCATAATGAAAACTGAAATCCTGGTTTTTCCTTTGTGCACATTTAGCATTTTGAGAAACAAGGCTACATTTGGTTTGTATTTGGAATCCTATCCATGACCCAGCTGTTATCAAAATGCCATTACAAATAAGTTTTGTTTGTTTGTTTGATTTTCTTTGATGACCCACTGGGGTTGTGTTCTGACTTTGTGTCCAAATATGTACTTAAGTGAGAGAAATGAAATTGTATGAGGTGGGTGGAGGGGTAAATGGATTTGTTTGTTTGGATGTT 1924 40.96 MDFRRDVRDKGWQAEAEDAESCSHNMIREKERTQWQELEHQALIFKYMVSGIPVPPDLLYTIKRTSLDTPFISRLFPHQYPDVAVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNSNPSTPPISSITHNSSTLSSSHSFGSLTNSETHPHPHPFLYHHASASSAHPSLLPDYRRNRNVYGGKEEDVDQHPFVREQHSGNMRGFSASSMEDPWQLTPLTMSCSSSSSRYKNGSALQGDYSSYLQLQSFGKYNEMQSKMERDEPQKTMHHFFDEWSPKESDRESWVDLDDKSSNTGSVCATRLSMSIPNHDFSSIFTSNKHNEN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46248481 46250799 - XM_039033203.1 Bhi06g01583 37922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01583 355 Pfam QLQ 33 62 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bhi06g01583 355 SMART QLQ_2 33 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bhi06g01583 355 ProSiteProfiles WRC domain profile. 99 143 IPR014977 -
Bhi06g01583 355 PANTHER - 32 346 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bhi06g01583 355 ProSiteProfiles QLQ domain profile. 29 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bhi06g01583 355 MobiDBLite consensus disorder prediction 128 185 - -
Bhi06g01583 355 Pfam WRC 100 142 IPR014977 -
Bhi06g01583 355 MobiDBLite consensus disorder prediction 142 181 - -
Bhi06g01583 355 PANTHER GROWTH-REGULATING FACTOR 6 32 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01583 - - - bhj:120079024 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01822 Bhi-Chr2:49683283 Bhi06g01583 Bhi-Chr6:46248481 2.06E-99 dispersed
Bhi06g01583 Bhi-Chr6:46248481 Bhi10g01554 Bhi-Chr10:38140163 7.14E-56 dispersed
Bhi06g01582 Bhi-Chr6:46248481 Bhi06g01583 Bhi-Chr6:46248481 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01582 . 6 112 GRF Transcription Factor Family AT3G13960 72.9 6.7e-43 172.6
Bhi06g01583 . 33 133 GRF Transcription Factor Family AT3G13960 74.3 2.2e-41 167.5
Bhi02g01822 . 8 110 GRF Transcription Factor Family AT3G13960 71.8 6.3e-41 166.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1408 PF08879 WRC 7.30E-21 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01583 Bhi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0