Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01595 GTTGGTTGCGATTCGTGGTTAGGCGTGTGCGTGTCTTACTTCTCTCTCTATCCTCTTTTCAGTTTTCATCATCGAAGAAAAAAGAAACCGCCATGAGAAACCCGCGCGTATAAACTCACGTCCCGCAGGAGCTGATGTTTGAAGAGTTCCGACCGAGGAGCGAGGACTGCACATTATCATCTCATAACCTCGCCGTCGTGCTTTCATCAGTTTCTTTGTGATCCTCTACTTTGATTCATTCCCGAGCTCTCTTGCGGTCGTATCTGCATCATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCCATTGTCGCTGGTGACATTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTCATCGGTAACGCGCAGGAGAGGTACAGCATCTTGATCTCCGATGCCGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATGTTATTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGAAAGATTATTGTTGTGCTCTGCCTTGAAACTATTATATTGGATTGTGAGATAATCGGGAATCCAAAATCATATGCTCAATCAGAGAATTTTGCACTAAAGGCAACGCCATCTAGAAATTTAGAGCAACCTGTCAAGGTTGGTAATGGTCATCCGAGTGCCAGAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCCATCATTAAGAATGAGGCACCAGCTCGTATAATTCCCATAGCTGCACTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCCAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTGGATAGTTTCTATGAGGTTATAGAAGTTGGTAAAGTCTACTTGATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTTAATCACCTAAAAAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACCGTGGAACTGTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACGTATCAGTGAAATTGAGAATGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCTGTCAATCCATCGATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAACTTGAAGGATGCGTCTGGCAGGAGCATTGAGCTGACACTGTGGGGGGAGTTTTGCAACAAAGAAGGTAAAAAATTGCAAGAAATAATTGACTCGGGGCTCTCTCCAGTTTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATCGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGGACTGGTACGATGGTGGGGGGAAGAATTCTACGTCTCTGTCCATTTCTAAAGAAATTATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCGTTTATCAAAACAGATTCTTTCTGCTACACAGCATGTCCATTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCAGTGTGAAAGGTGCAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTTCAAGCCCAAATTCAAGACCATACTGGATTGACATGGGTGACAGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGCGTTTCAGCCAAGGAGCTGTACATGTTGAAGTATGAAGAGCAGGATGAAGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGGCTCAAAATTAAGGAGGAGATGTATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAGGGTAAACTATACTTCAGAAAGTAAATATATGTTGGATTTGCTTTCAAATCAAAATTTTCGAGGTAACAAATGATTTCTTGTTGACTAGGC 2171 42.65 MPVHLTPNAISAIVAGDINSKPLVQVLDIKLIGNAQERYSILISDAVSAEQAMLATQLNDVIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSYAQSENFALKATPSRNLEQPVKVGNGHPSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDSFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSFRRISEIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSIELTLWGEFCNKEGKKLQEIIDSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRDWYDGGGKNSTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWQCERCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDEVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYTSESKYMLDLLSNQNFRGNK 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46364185 46368468 + XM_039034080.1 Bhi06g01595 37934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01595 627 Gene3D - 177 287 IPR012340 -
Bhi06g01595 627 CDD RPA1_DBD_A 180 283 - -
Bhi06g01595 627 Pfam Replication protein A OB domain 301 405 IPR031657 -
Bhi06g01595 627 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 618 - -
Bhi06g01595 627 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Bhi06g01595 627 Gene3D - 290 430 IPR012340 -
Bhi06g01595 627 Gene3D - 431 620 IPR012340 -
Bhi06g01595 627 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi06g01595 627 CDD RPA1_DBD_B 312 419 - -
Bhi06g01595 627 Gene3D - 3 111 IPR012340 -
Bhi06g01595 627 SUPERFAMILY Nucleic acid-binding proteins 177 291 IPR012340 -
Bhi06g01595 627 SUPERFAMILY Nucleic acid-binding proteins 295 425 IPR012340 -
Bhi06g01595 627 CDD RPA1_DBD_C 447 620 IPR013955 -
Bhi06g01595 627 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bhi06g01595 627 PANTHER REPLICATION FACTOR A 1, RFA1 2 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi06g01595 627 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Bhi06g01595 627 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bhi06g01595 627 Pfam OB-fold nucleic acid binding domain 192 263 IPR004365 GO:0003676
Bhi06g01595 627 SUPERFAMILY Nucleic acid-binding proteins 444 619 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01595 Bhi-Chr6:46364185 Bhi11g00244 Bhi-Chr11:5812085 0 dispersed
Bhi06g01594 Bhi-Chr6:46364185 Bhi06g01595 Bhi-Chr6:46364185 0 tandem
Bhi06g01595 Bhi-Chr6:46364185 Bhi06g01596 Bhi-Chr6:46364185 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01595 K07466 - csv:101207583 1176.77