Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01629 ACCAAACTGCAAACCCAAATAAACCATACAACTTAACTTTATTTCACTTCTCTTCATTGGAAGAAGACTTCAGTACGACCCACAGCACCAGGATAATTATACGCCCGCCATTGATGAAGAAGGACAGCTCCATGAATCCTAACTTAAAGCTTCTTCTACCTCCGGCCGACGAAGTTTCCTTTGCCTTTATAACCCGAAGCGGTACTTTCACTGATGGAGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAAGAGGACGACGAAAGTCCTCCGCCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATTGGAAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACGAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCCTTGCCAAGGAATTAAAAATTAATCAGTTGGCACAAAACCCTTACATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGGTCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAGCCGTATCTGGCAGCCATTTGTTACCAGGTACTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCATAGAGACCTTAAACCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACAGACTTTGGTGTTAGTGCTATACTGGCAAGTACGGCTGATCAAGCAAATTCTTTTGTTGGCACGTATGCATACATGTCTCCGGAGAGACTCAACGGGGACAAATATGACAATAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCGACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAATGTTTTTTTGATGTTATGGTGGCCGTAGTAGAACTAGCATCACCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAGAAGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATCAAAAAGTTCGAACACTTCGATGTAGATCTCGCAGCTTACTTCAAAGATGCTGGCTCTCCATTAGCAACCTTCTAATTTTATATGGAACAGGAGTCAGTCGCAGGCTCTTCGACTTTGACATCTCAATACCTTGGTGTGGCATCAACTTATTTGATTGGAGGAAATAGGGGCTACTACAGGATCAAACTTCACTGGGGACATTCAAGAATCCTTTTCATTTGTTGATGAGTAAATCAATCCTGATGTAAACTATGCGATGCTCGTTGTAATATATTGTGTTCTTACTACAATGAAAAATGAAAAATGAAAAATGAGGAATGTAATTCGATTAATTTGGACTGATGAAATGAAAATCATTTTAGGCAGTCGAGGAAACTGGAAAAACATTTTGGTATATGTATATATATATATATATATTGTGTTAATGTAATGAAAAA 1537 39.43 MKKDSSMNPNLKLLLPPADEVSFAFITRSGTFTDGDLLVNRDGVRIVSQEDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCRLLAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWECFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFEHFDVDLAAYFKDAGSPLATF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46699942 46703019 + XM_039033709.1 Bhi06g01629 37968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01629 353 Pfam Protein kinase domain 72 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01629 353 SMART serkin_6 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01629 353 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01629 353 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Bhi06g01629 353 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
Bhi06g01629 353 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 352 - -
Bhi06g01629 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Bhi06g01629 353 SUPERFAMILY Protein kinase-like (PK-like) 56 335 IPR011009 -
Bhi06g01629 353 PANTHER MAP KINASE KINASE 5 352 - -
Bhi06g01629 353 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Bhi06g01629 353 CDD PKc_MAPKK_plant_like 68 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01629 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101206374 681.789
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi02g01848 Bhi06g01629 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01848 Bhi-Chr2:50102975 Bhi06g01629 Bhi-Chr6:46699942 0 dispersed
Bhi06g01629 Bhi-Chr6:46699942 Bhi06g01688 Bhi-Chr6:47869926 3.23E-152 dispersed
Bhi01g02812 Bhi-Chr1:69891858 Bhi06g01629 Bhi-Chr6:46699942 5.65E-66 transposed
Bhi08g01328 Bhi-Chr8:40376514 Bhi06g01629 Bhi-Chr6:46699942 1.06E-78 transposed
Bhi02g01847 Bhi-Chr2:50102835 Bhi06g01629 Bhi-Chr6:46699942 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01848 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi02g01847 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi06g01629 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.7e-125 446.0
Bhi06g01688 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi06g01689 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi02g01848 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi02g01847 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi06g01629 CCT 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.7 7.1e-118 421.4
Bhi06g01688 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi06g01689 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi11g01603 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01601 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01602 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 66.3 1.2e-126 450.7
Bhi08g01328 . 46 319 MAP Kinase Kinase Gene Family AT1G51660 55.8 1.6e-83 307.4
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 68.9 2.4e-129 459.5
Bhi08g01328 . 44 311 MAP Kinase Kinase Gene Family AT3G21220 54.9 5.3e-84 308.9
Bhi06g01688 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi06g01689 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi02g01848 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi02g01847 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi06g01629 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.3e-109 391.7
Bhi08g01328 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.4 6.7e-107 384.8
Bhi01g02812 . 69 335 MAP Kinase Kinase Gene Family AT1G18350 51.8 2.7e-76 283.1
Bhi08g01328 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.1e-80 295.4
Bhi08g01328 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 5.7e-114 408.3
Bhi01g02812 . 76 335 MAP Kinase Kinase Gene Family AT1G73500 52.5 7.2e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87837 PF00069 Pkinase 2.50E-69 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01629 Bhi_Chr06 FPKM 18.300411 24.178915 19.711805 18.109301 14.671637 19.271297 18.801891 21.028143 22.016783 24.12089