Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01630 CGACCACGCAATCGAATTATACAAATTAAAATGGAAATTTAATTTGAAAAAAAAAATGAATTGGACTGACTCTCGTTGATGGTGGTGTTTCTAAGGCAATGATATCCGTGGCGGTTGCCGTTAACGGCGTCCGTGGCGGCAAAGGCGGTGGAGGAAGCCGCCGCGCTGTGAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGCTTCATATTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTGGCTGTCTCAGAACTTGATGCAGACGTGGTAGCTCTTTATGTTCATGATGTGAAACAGAAATATGAACAAGTTTTTGTCCCTTTTAAAAAGTTATGTAGAAGAGAAAAGTTTCTTCTACTGGTAGAAACTTTGGTTTTGGAGGATGATAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGGATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCGTAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGTTCATAGTTCTTTTGATATTCATGTTATATATAAGAGGAGAGTTATCACACGAAAGGCTAGTACTGCTCCGTCCAATGAAACTGACTCGAGGCAGTGGATGCTCGGTGACACAGATTACTACAGGGGTTCCAGTGCTGCTAGTGAAAAATCATTGGGAACTTTCTCTTCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCAAAGTTAACTCTACCGAGGAACTGAACTCTTTGAATACTCTGACTGAGGAGGAAGATATGCAGGCCGAAGTTGAATCTTTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTTCATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAGAGTAAATGCTGCTTTGGAAAGGGAACAAGCTTTGAGGAAAACTGTTGCTAAAGAGAAAGAAAAACACTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAGTCCGTGGAGAAGCAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGATATAGAAGATATACTACTGCCGAAATTGAAGCTGCGACAAATTTCTTCGATGAAGTTAATGTGATTGGCGAGGGAGGATATGGGAAAGTCTACAATTGCAGTCTCGATCATACCCCTGTAGCGATTAAGGTTTTTCAACACGACATATTCAAGAAAAAAGACGAGTTTCTGAAAGAGGTTGAAATTCTTAGCCAGATACGTCACCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAATGGAAAAGCTCCCCTCCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGACTTGCATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCTGACAATGTCACAGAGTACCGAAACACTATCCTCGCCGGTACTCTACACTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCGGATACATATGCACTTGGAGTAACAATTCTGCAGTTGTTGACTGGACGACAGCCACATGGTCTTCTTCTTGCTATCGAAAATTCGATTGCAAGTGCCTCCCTTGCAGATATTCTGGACAAATCAATTAGTGACTGGCCTCTAGCTAAAGCTGAAGAGCTAGCTCGACTCGCGTTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATACTTGTGAAAATGAAGACAAAGGTTTTGCTAATCCCCTAAGCCACTACTTCTGCCCAATCCTCCAGGAAATCATGGAGGATCCTTATATAGCAGCTGATGGCTTTACTTACGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACATATCGCCGGTGACAAAGCTTAAGCTCCAGCATTCTCTTTTTATTCCAAACCACACTTTGCGTTCTGCCATACAAGAGTGGAGGTCAAGAGTGACAGTTTCATCTTCCTAAGTTGGAAAATTTGTTTGTAATTGTCTCAAGCATTCTTATGGGGGTTTTTCCTTTTTCCATTTTTTAGAAAGAGAACATCTTTGTTAATATCTGTATAGTTAACAGAAAAATTTCAGGAAAGTTTGGTATTATTTTGTGCCGTGAACTACTTTCAGTATTCCAAGTTTATAAAGAGTAAATAATATACTTCATGGTGATGGGAGGGAGGCTCTTTCCTTCCTTTTT 2513 41.9 MISVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQVFVPFKKLCRREKFLLLVETLVLEDDNPATALLRYASESGIKRLVLGSCFRTCVARKLKGDSVPSAIMRTVHSSFDIHVIYKRRVITRKASTAPSNETDSRQWMLGDTDYYRGSSAASEKSLGTFSSSSLSIGHRRGDSLKVNSTEELNSLNTLTEEEDMQAEVESLQLELETTVSLYKQACEELVHAQKKVQSLTSECLEESRRVNAALEREQALRKTVAKEKEKHLEAIKELEEAKDLLAKEAYERQLAELNALKESVEKQKIVDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGEGGYGKVYNCSLDHTPVAIKVFQHDIFKKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKAPLPWSTRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASASLADILDKSISDWPLAKAEELARLALKCLKLRCRDRPDLESEVLPVLKRLVDFADTCENEDKGFANPLSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDISPVTKLKLQHSLFIPNHTLRSAIQEWRSRVTVSSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46703319 46706922 - XM_039035195.1 Bhi06g01630 37969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01630 729 CDD STK_N 3 163 - -
Bhi06g01630 729 Gene3D Phosphorylase Kinase; domain 1 351 444 - -
Bhi06g01630 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Bhi06g01630 729 Pfam Protein kinase domain 373 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01630 729 PANTHER OS02G0152300 PROTEIN 225 723 - -
Bhi06g01630 729 PANTHER OS02G0152300 PROTEIN 2 206 - -
Bhi06g01630 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524
Bhi06g01630 729 SUPERFAMILY RING/U-box 646 723 - -
Bhi06g01630 729 Coils Coil 259 279 - -
Bhi06g01630 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 727 IPR013083 -
Bhi06g01630 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01630 729 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 225 723 - -
Bhi06g01630 729 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 206 - -
Bhi06g01630 729 SMART serkin_6 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01630 729 Pfam Universal stress protein family 19 139 IPR006016 -
Bhi06g01630 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842|GO:0016567
Bhi06g01630 729 SMART Ubox_2 658 720 IPR003613 GO:0004842|GO:0016567
Bhi06g01630 729 Pfam U-box domain 659 721 IPR003613 GO:0004842|GO:0016567
Bhi06g01630 729 CDD RING-Ubox_WDSUB1_like 659 699 - -
Bhi06g01630 729 Coils Coil 287 344 - -
Bhi06g01630 729 Gene3D HUPs 4 158 IPR014729 -
Bhi06g01630 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Bhi06g01630 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 142 - -
Bhi06g01630 729 Gene3D Transferase(Phosphotransferase) domain 1 445 653 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01630 - - - cpep:111805862 1230.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01630 Bhi-Chr6:46703319 Bhi09g00361 Bhi-Chr9:7565456 3.85E-140 dispersed
Bhi06g01630 Bhi-Chr6:46703319 Bhi09g02386 Bhi-Chr9:65099691 1.51E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g145 . Blo16g00977 Bda01g01340 Bda11g01037 . . . . . . Cma05g01403 Cma12g00651 Car05g01319 Car12g00600 . . . . . . . . . . Cla11g00152 . . . . . . . . . . . Csa02g00037 Chy05g01451 . . . . . . Bpe13g01247 . Bma06g00882 . Cmo05g01403 Cmo12g00590 . . . . Cpe11g01178 . Bhi06g01630 . . . . . . . . . . . . . Lsi11g00178 . . Cme05g02054
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01630 . 3 729 Plant U-box Gene Family AT5G57035 52.7 3.4e-224 775.8
Bhi06g01161 . 426 715 Plant U-box Gene Family AT5G57035 56.9 2.3e-95 347.8
Bhi07g00452 . 199 426 Plant U-box Gene Family AT5G05230 57.3 3.0e-66 250.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87838 PF00069 Pkinase 1.60E-41 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01630 Bhi_Chr06 FPKM 13.325301 15.156778 10.970327 10.114677 11.532027 12.039605 11.42167 11.879694 11.834682 13.069485