Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01687 GCTATCTCGGGGGAAACTGCGTTGTAAGAAGAGCAGAGAGAGGATCATTTGGGAGCACATTTCGTCAGTGGACATAAATTGAATCTTTCTCTCAATTCATTTTAGCATAGAAAAAGGAAAAACCCTAGAAGAGATTTGAATCAGAAGAAGGAAGAAGAAGAAGAAGAAGAAGCCAGCAGCCGGGAAAGATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCAGCCATTATCGGCCAAGACGGCAGCGTTTGGGCTAAAAGCGAACATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGATTTCAATGAACCCGGGACGCTTGCTCCAACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCTGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGGCTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGATTATCTCATTGAACAGGGCCTCTAAATATCGGGAAACCGTGTATTGTTTGTACAAGTCTATGGACTCTTGAATGGAAATGGGTTTGATGCTTGAGGAGTGATGCTTATGTTTCTCGTTATTAGTGTTGTCTCTTTCACTTTTTTTTTCCTTTGAAATATTGTGGTGGTTTTCAAGTGAGGTCCATGTTGTAGCATCAAATATGGATATGGTAAACCAATTCAGCATAAATTTATAATTACTTTTCTATTCTATCTGTTGATTTTTGCAGCAGGCTCCTGTATAACATGAGGAGATAATAGTCTCTCTAAACCCAAATGTGGGATGTTGGGACATTTTCAGTCCATCTTGCTCTTA 914 41.68 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSEHFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMAPGQCNMIVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47860117 47862078 + XM_039034940.1 Bhi06g01687 38026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01687 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Bhi06g01687 131 Gene3D Dynein light chain 2a, cytoplasmic 2 131 - -
Bhi06g01687 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Bhi06g01687 131 PANTHER PROFILIN-2 1 131 - -
Bhi06g01687 131 CDD PROF 2 130 IPR005455 GO:0003779
Bhi06g01687 131 SMART prof_2 1 131 IPR005455 GO:0003779
Bhi06g01687 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Bhi06g01687 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Bhi06g01687 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01687 K05759 PFN; profilin - csv:101219562 242.276
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01687 Bhi-Chr6:47860117 Bhi09g00471 Bhi-Chr9:10185267 2.82E-77 dispersed
Bhi06g01686 Bhi-Chr6:47856756 Bhi06g01687 Bhi-Chr6:47860117 6.19E-75 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g252 . Blo16g01002 Bda01g02037 Bda11g01079 . . . Bma11g00546 . . Cma05g01374 . Car05g01288 . . . . . . . . . . . Cla11g00182 Cam11g0212 Cec11g0213 Cco11g0226 Clacu11g0347 Cmu11g0197 Cre11g0695 . . Cone4ag0755 . . Csa02g00080 Chy05g01409 . . Blo14g00527 . Bda09g01121 . Bpe13g01272 Bma01g00212 Bma06g00836 Sed11g0036 Cmo05g01377 Cmo12g01309 . . . . Cpe11g01144 Cpe07g01035 Bhi06g01687 Tan08g0108 Cmetu05g1709 . . . . . . . . . . . Lsi11g00217 . . Cme05g02013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 3.4e-214 741.5
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-212 735.7
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.9e-212 735.7
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 9.4e-212 733.4
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 3.4e-214 741.5
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G59370 97.3 4.5e-214 741.1
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G59370 93.6 3.9e-210 728.0
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.5e-214 742.7
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.3e-213 739.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 6.5e-213 737.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G46520 93.9 1.8e-210 729.2
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 742.7
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.5e-214 741.1
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.9e-213 738.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 1.2e-211 733.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 4.3e-209 724.5
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.2e-208 720.3
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.4e-207 718.8
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 5.3e-207 717.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.5e-209 726.1
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.8e-208 721.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 8.2e-208 720.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.8e-207 719.2
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.5e-214 741.1
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.9e-213 738.4
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 5.5e-212 734.2
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 1.2e-57 219.9
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 8.7e-56 213.8
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 74.0 2.5e-55 212.2
Bhi01g03373 CCT,ECH 1 129 Cytoskeleton Gene Families AT2G19760 74.4 2.8e-54 208.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.4e-53 205.7
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.5e-57 218.4
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 7.4e-55 210.7
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 7.4e-55 210.7
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 72.5 1.8e-53 206.1
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29350 72.0 2.2e-51 199.1
Bhi06g01687 . 1 87 Cytoskeleton Gene Families AT5G56600 77.0 3.4e-37 151.8
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.2e-65 244.2
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 1.1e-58 223.4
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 1.1e-53 206.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29340 72.4 9.2e-53 203.8
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.7e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01687 Bhi_Chr06 FPKM 2.885333 3.699438 2.715888 2.621423 3.970018 1.894217 3.78523 4.268993 2.77719 3.473627