Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01688 TGGCCCTCAGCCCAATCAAAATCAAATAAGTAAAAAATTAAAAAAGAAAAAAGAAAAAAAAAGGAAAATGAAAAACCCTAAAAGGAAAACCTCAGCCGCCTACCCGTCTCTTCACCTTCTCCGCTCGAACCGTTGCACCGTCGCACGCACGCTGGCTGCCGCCATCACTTTCTCAGTTTCTCCTCTACGGCTCTCCTCCAGATCGATTCTGAAAGCTCCACGGCCACCGCCATCGCCACCGCCAGTAGCCACTTCCAATTCGACATTCCACCACGAAGCAGATAGTCGCTTTCCTCACAGTCTACAGAGAAAAGTGGAAAAACCTCAATCGCACATTTCTCCTCTCCATTCACTTCTTTCAATCTCCTTTCGCCCTACGAATTTGATATTGAAAACATTCGGTGAAAGATGAAGACTAAGACGCCATTGAAGCAACTCAAGCTTTCTGTTCCTGTTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAATCAGAAAGGATTACGGCTTATATCTGAAGAGAAAGAAGCGCAGACTACAGATTGTAAGGAGCTTGATGCTGATTTCTCATTGGAAGATCTAGAGACCGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGGAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGAGGTTCTCTAGCTGATGTAATCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTACATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAATCATAAAGGTGAGGTCAAAATAACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGCCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGGGGAACATATGACTATAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCTCCACCTGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGAGAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTAAGTTTTCCTAGATGATAATAATAATAATAATCATCATAAAACATCTATGTTTACTGTAATATTTTAGAAAAAAAATTACAATCTTTGTCTACCTTGTGTAATATGCTTTTGCCTTGTGAAACATGGAATGTTGTCAAATCAGTGATTTCGTAATGTCAATCTCAATTAACCAAATTTATTTATTTTTGTAAAAA 1652 40.25 MKTKTPLKQLKLSVPVQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKEAQTTDCKELDADFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEEKDIDVGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47869926 47873922 + XM_039034745.1 Bhi06g01688 38027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01688 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Bhi06g01688 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01688 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Bhi06g01688 354 CDD PKc_MAPKK_plant_like 67 334 - -
Bhi06g01688 354 SUPERFAMILY Protein kinase-like (PK-like) 67 337 IPR011009 -
Bhi06g01688 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Bhi06g01688 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 353 - -
Bhi06g01688 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01688 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Bhi06g01688 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi06g01688 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01688 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 682.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01847 Bhi-Chr2:50102835 Bhi06g01688 Bhi-Chr6:47869926 3.41E-164 dispersed
Bhi06g01629 Bhi-Chr6:46699942 Bhi06g01688 Bhi-Chr6:47869926 3.23E-152 dispersed
Bhi06g01688 Bhi-Chr6:47869926 Bhi11g01601 Bhi-Chr11:46148486 1.57E-79 dispersed
Bhi06g01688 Bhi-Chr6:47869926 Bhi06g01689 Bhi-Chr6:47869926 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01848 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi02g01847 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi06g01629 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.7e-125 446.0
Bhi06g01688 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi06g01689 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi02g01848 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi02g01847 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi06g01629 CCT 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.7 7.1e-118 421.4
Bhi06g01688 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi06g01689 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi11g01603 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01601 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01602 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 66.3 1.2e-126 450.7
Bhi08g01328 . 46 319 MAP Kinase Kinase Gene Family AT1G51660 55.8 1.6e-83 307.4
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 68.9 2.4e-129 459.5
Bhi08g01328 . 44 311 MAP Kinase Kinase Gene Family AT3G21220 54.9 5.3e-84 308.9
Bhi06g01688 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi06g01689 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi02g01848 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi02g01847 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi06g01629 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.3e-109 391.7
Bhi08g01328 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.4 6.7e-107 384.8
Bhi01g02812 . 69 335 MAP Kinase Kinase Gene Family AT1G18350 51.8 2.7e-76 283.1
Bhi08g01328 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.1e-80 295.4
Bhi08g01328 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 5.7e-114 408.3
Bhi01g02812 . 76 335 MAP Kinase Kinase Gene Family AT1G73500 52.5 7.2e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87839 PF00069 Pkinase 1.30E-66 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g01688 Bhi_Chr06 FPKM 9.894382 9.652524 10.3003 9.739122 10.0545 8.491655 9.363962 9.605778 8.392728 8.879685