Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g01929 AACCAAAAGAAGAATATAAAACACATCTTTCTTCTTCCTCTATTTCTTTGCCTATTTTCCCTTCTCTCTCTCATTTCATTTTGGAATTTTTTAGTTTGCAATTTTCTTTTTTTTTTTTTTTTTTAATTCCAGTCTCTTCTAAAAGCTATATATATATTTGTTTTTTTTTTTTTCCTAATTAATTATCAATCATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGTAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCATAGCCACAGTGGCAGTGGAGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAAATGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACTAAGAATGATGCGAGTAATATGGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGATTGAAGAAATGATTATGATAATCTTGAAGGAAGAATTATGATCACTTGAAATTTGGGTATTTTCAAGGGGTCAAAATTAACAGCCCATGCATATGTTTCCTTATTTCCTTTCTATGTTTTATTTGCAATTAGTTTATTGATTGTTAGGGGAAATGTTTGCCTTCTTTAATTATGAACTGAATTTCTCTTCCCTTTATAATGTGTCTGATTTAATAATATGTATGTATCCCCATTTTACTATGAAAGTAAGTTTAATTAATAA 1044 35.25 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTNDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDASNMGSEKHLMSVPGLHY 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 53614028 53618171 + XM_039033740.1 Bhi06g01929 38268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g01929 196 PANTHER AXIAL REGULATOR YABBY 5 1 181 - -
Bhi06g01929 196 SUPERFAMILY HMG-box 110 159 IPR036910 -
Bhi06g01929 196 Pfam YABBY protein 8 166 IPR006780 GO:0007275
Bhi06g01929 196 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Bhi06g01929 196 Gene3D High mobility group box domain 101 161 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g01929 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219877 385.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01929 Bhi-Chr6:53614028 Bhi10g00206 Bhi-Chr10:4368030 6.36E-62 dispersed
Bhi02g00976 Bhi-Chr2:21993237 Bhi06g01929 Bhi-Chr6:53614028 6.61E-94 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g01473 . 5 173 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 6.0e-47 184.9
Bhi07g01472 . 5 171 C2C2-YABBY Transcription Factor Family AT1G69180 55.3 1.0e-46 184.1
Bhi12g00406 . 84 243 C2C2-YABBY Transcription Factor Family AT2G45190 58.9 3.1e-42 169.1
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT1G08465 66.7 3.2e-56 215.7
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 8.8e-46 181.0
Bhi02g00976 . 6 177 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 1.7e-44 176.8
Bhi10g00205 . 1 141 C2C2-YABBY Transcription Factor Family AT1G08465 65.0 1.4e-43 173.7
Bhi12g00406 . 40 233 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 9.1e-43 171.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT1G08465 63.3 1.5e-42 170.2
Bhi12g00406 . 51 242 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 3.9e-50 195.7
Bhi07g01745 . 1 174 C2C2-YABBY Transcription Factor Family AT1G23420 50.8 3.0e-39 159.8
Bhi02g00976 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.1e-63 238.4
Bhi06g01929 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 3.0e-61 232.3
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 4.4e-49 191.8
Bhi12g00406 . 42 205 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 2.5e-44 176.0
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT2G26580 61.5 8.4e-40 161.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 2.3e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1445 PF04690 YABBY 4.30E-71 CL0114 Bhi TF