Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g02000 TTCTTCAATTTACTCCTCACTCTCACACACGTTTCCATTATTCTCTCTCTTTCTCCCAATTAATTTCTCACCAATAACACAACTCCACATCACTCACCAATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGTGCCAATTCCTCGTCTTCCTCCTCCTCCTCCTCCTCCACTTCATGTTCCATCTCACCCTCATCGAAACTTCGGCTGAAGCGTGATCGAGAAAGTAGCAACAATAGTCGCCACCCAAGTTACCGCGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACATTCGCCACGCCGGATATGGCGGCACGTGCTCACGACGTAGCTGCCCTCACTATCAAAGGCAATTCCGCCATCCTCAATTTTCCTGAACTCGCCGCCTCATTACCTCGCCCCGCCTCCTCGTCCCCTCGTGACGTTCAATCCGCCGCCGCTCTTGCCGCTTCAATGCAACTTCCTGACGTCATCTCATCTCCACCGCCACCGCCACCACCACCCTCATCGCCTCCTTTTTCGTCGTCGCCCGAGTTGGACGAGTCGACGCCGGAGGAACTAAGTGAAATTGTGGAGTTGCCGAGTTTGGGAACGGGGTACGAGAAATCGGTCGAATCGGTGACCGAGTTCGTGTTTGACGAGTGGCAATATAGCTATGGGCCATGGGATCAAGAAAATAAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAGAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAACATTAAATTGATATCACTTCTTTACAAACTGGGTTGTGAATTTGTTGTGTGATTTTCTCTCTCTTCAATTTTTTTTTTAAGATATATATTTAATTAAATTAAATGTGAAGTCCTTTTACAATTTTTTTAAAGGGGCTAAGAAATTTAAATTAGGGATCTTGTCTTGGTGAGTGTTTTCTTCTCTGTGTTTCCAGTTCCATTTCCTCTCTCTATTCAGTTAACCATTTTTTTTTTT 1084 46.96 MADATVPETDSGGANSSSSSSSSSSTSCSISPSSKLRLKRDRESSNNSRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVISSPPPPPPPPSSPPFSSSPELDESTPEELSEIVELPSLGTGYEKSVESVTEFVFDEWQYSYGPWDQENKSSKEEEEEAYEYFIDQMAMAERECVIPTALFQPLPFSW 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 54954420 54955503 - XM_039034562.1 Bhi06g02000 38339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g02000 249 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Bhi06g02000 249 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Bhi06g02000 249 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Bhi06g02000 249 Coils Coil 214 234 - -
Bhi06g02000 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 16 232 - -
Bhi06g02000 249 MobiDBLite consensus disorder prediction 141 158 - -
Bhi06g02000 249 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Bhi06g02000 249 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Bhi06g02000 249 MobiDBLite consensus disorder prediction 1 56 - -
Bhi06g02000 249 CDD AP2 51 111 IPR001471 GO:0003700|GO:0006355
Bhi06g02000 249 MobiDBLite consensus disorder prediction 9 34 - -
Bhi06g02000 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 232 - -
Bhi06g02000 249 MobiDBLite consensus disorder prediction 139 171 - -
Bhi06g02000 249 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Bhi06g02000 249 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00563 Bhi-Chr1:10181030 Bhi06g02000 Bhi-Chr6:54954420 4.00E-41 dispersed
Bhi04g00846 Bhi-Chr4:21311079 Bhi06g02000 Bhi-Chr6:54954420 1.91E-54 dispersed
Bhi06g00024 Bhi-Chr6:488390 Bhi06g02000 Bhi-Chr6:54954420 3.52E-35 dispersed
Bhi06g00027 Bhi-Chr6:622670 Bhi06g02000 Bhi-Chr6:54954420 1.74E-31 dispersed
Bhi06g02000 Bhi-Chr6:54954420 Bhi09g02579 Bhi-Chr9:70068021 2.36E-48 dispersed
Bhi12g00202 Bhi-Chr12:5831949 Bhi06g02000 Bhi-Chr6:54954420 8.84E-29 dispersed
Bhi06g00107 Bhi-Chr6:2923579 Bhi06g02000 Bhi-Chr6:54954420 2.87E-30 transposed
Bhi11g00041 Bhi-Chr11:832360 Bhi06g02000 Bhi-Chr6:54954420 3.85E-47 transposed
Bhi02g01202 Bhi-Chr2:28213831 Bhi06g02000 Bhi-Chr6:54954420 4.41E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1449 PF00847 AP2 7.20E-13 CL0081 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g02000 K09286 - csv:101212945 356.681