Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g02017 AGAGAGAGGGAGGAAAGAAGAAGAACAAAAGGCCTTTTTCGCTCCTATCCTTCCTCTCTTTCCTTCGGAGCTCTCTTCAATTCACAGTTCAAAAAAACCCTAAATAATTTGATTTTTCTGCTCTGATTTTTGCTTTCTTTGTGATTGTTTTACGTGAAGGCGAAGGTTTTTTCTGATTTTGGTTTCTTGTTGCTGAGTTTCGGCGTAATATTTGAGCTTCAAAAGCTTAATTTTATCTGGCGGTATTTTGATTGGTAATTGGATCCAGAAGTCAGACGATTTGAAGTTGGTACGGGGAATTCCATTTTTGAATTGAAGAGTTGATTGATTGTTCGAGTTTGATTTTCCTTTTTTGCGGAAAATTTGGAATAGTGGCGAGATTATTGAAATTTAGGATTTAAATTTGATGGGGGAAGAAGATTCCGTAGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTTCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGGGCCTCGCGTCCTCAATCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAACCAAAACCACCACAGACGCAGATGGTGGCGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGCGATGGTTGCAACTGCATAAATTGTTATAACAATGTCGAAAATGATGCCGCTAGAAGAGAAGCAGTTGAAGCGACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCGAGCAGTCCTCATGGGATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGTGAGTGTTTCCAGGCCAACATTCTCTGTTCGGAAAACTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACCTTCATTCAACAGGCAGCGAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACATATCCACTCACAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGCGTTGGAAGCCCGTCAGTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAAGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACAATTCAAGAAAAGCAATCTGATGGCCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATAGGTTACAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCTGATGATCGTTCAAGTGCAAACCAGGCTGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGTGCTCCCATGTCTCCCGGAACTTTAGCTTTGATGTGCGACGAGCAAGATACAATGCTAATGGCTGCTGCTTCCCCCAATAGACTAATTGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCATGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATTGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTCATTACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAATGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATATTAGAACTGAAACTCAAAGTAATTTGGGACAACTCAACAATAAAGTTACAAAATCTACAATTACACCATCGGTGAAGACATCGCAGACAGTAACTCCAGCAGTGATGACCCTTAATAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGAAAGTCGTAATCAGCAGACCAAAGATTGACCGAGTTGGTAAAGAAAACTGTAGCCATTCGTTATCGATCAATATGATATTTACCGCTCAGCCCTCATTCTGGGTTGTCCACTCCACACTGTGCTGACCCTTCAGAGTTGGAAGCTATATTTCGATGAAACCGTTCCACGGATTTCTACATTATTGATGTAAGTTAAATTTTGATGCTTTAAGTTCCATTCTTGGTCATTATTGATGCTGTGAAATGCAAAGCTCCATGTTGGCCATTATTGTCATTTAGATATGAAATTGAGTTTCCCATCTTAGCTTTGTAATTGTAGTTATTTTTCCTCCTATTTTGGGAGAGGTGAAAGGTGTTAGGGTTTGTTCTTTTCATATTTCTAGATGAAAAGAGAGATGGAAATCCTTTCGTAACTTATTTCTAATGTGGCCAATTCTAGCTAAGCTAAAATCTGTTGCCCAGTTTCCTCTAGGATTTTTATTTGTCTGAGAATTTTTCCTATTTTACTGAAGCATTGAATAACAAGGGCTTCATAAATCTA 2701 42.02 MGEEDSVGASQKKAQSDGSALSNSSSSDIPSKKLARQLDFTGYGGASRPQSHSNSHSQSQAPLVAQNLPQAQPKPPQTQMVAASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRPVPFQQANHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQEKQSDGQTETSVASSTQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLIGPGCSTSSQLPHGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARNEVGNQEQQFNNGTTNIRTETQSNLGQLNNKVTKSTITPSVKTSQTVTPAVMTLNNDQRQKVLPLS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 55344757 55349858 + XM_039035103.1 Bhi06g02017 38356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g02017 584 PANTHER TESMIN/TSO1-RELATED 26 78 IPR028307 -
Bhi06g02017 584 PANTHER TESMIN/TSO1-RELATED 63 568 IPR028307 -
Bhi06g02017 584 SMART CXC_2 118 158 IPR033467 -
Bhi06g02017 584 SMART CXC_2 203 244 IPR033467 -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 92 120 - -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 375 443 - -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 44 78 - -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 9 32 - -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 1 78 - -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 396 412 - -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 413 427 - -
Bhi06g02017 584 MobiDBLite consensus disorder prediction 375 395 - -
Bhi06g02017 584 ProSiteProfiles CRC domain profile. 119 243 IPR005172 -
Bhi06g02017 584 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 26 78 - -
Bhi06g02017 584 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 63 568 - -
Bhi06g02017 584 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 206 240 IPR005172 -
Bhi06g02017 584 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 120 155 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g02017 - - - csv:101211978 1081.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g02017 Bhi-Chr6:55344757 Bhi12g01691 Bhi-Chr12:54742349 1.13E-32 dispersed
Bhi06g02017 Bhi-Chr6:55344757 Bhi06g02018 Bhi-Chr6:55344757 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g02017 . 31 514 CPP Transcription Factor Family AT2G20110 58.4 1.8e-147 520.4
Bhi06g02018 . 31 520 CPP Transcription Factor Family AT2G20110 57.7 1.3e-145 514.2
Bhi02g01183 . 34 550 CPP Transcription Factor Family AT2G20110 50.7 7.3e-125 445.3
Bhi06g02018 . 29 527 CPP Transcription Factor Family AT4G29000 57.5 5.4e-153 538.9
Bhi06g02017 . 29 521 CPP Transcription Factor Family AT4G29000 57.1 1.5e-150 530.8
Bhi02g01183 . 28 526 CPP Transcription Factor Family AT4G29000 53.6 2.1e-141 500.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1450 PF03638 TCR 3.10E-12 No_clan Bhi TF