Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00087 ATGGTAGGAGGTGGGCCGCAAGTTCTTGAACAGCCGCCGCAGTCTTTGCCTCAACCCCTATCTGCTGCAGAAGAGGAGGCTGTTAAGAGGAATACAGACTGTGTTTACTTTCTTGCTTCGCCTTTGACTTGTAAAAAGGGAAGTGAATGTGAATATCGCCATAGTGAATATGCCCGGGTCAATCCTAGGGATTGCTGGTTCTGGTTGAATGGTAACTGCTTGAATCCAAAATGTTCATTCCGACATCCACCTCTTGATGGCTTGGTAGGAACTCCTCATTCAACAACTCCGAGTTCCCAGATTCCTTCTCAAACTTCAGCAATTCCCTCCGCTCCTGTCAACTCGAGTAAACAAGCAGTCCCCTGCATTTTTTTCCAGAAGGGTCTATGTCTTAAAGGAGATCGGTGTGCATTCTTGCATGGGCCTTCGCCCGTTCCAGCAAACAAAATCCCTCAGATGGCAGCAAATGCCCAAGCTGGTGAGCCACCGAGTGTTAAGAAAGTTTCTGGTGGTACCCAAAGGAGCAGTCAAGAGCAGAAGATTCCTCAAGCAAATTTTTTGAAGTTAATCGGTGGTTCATCTGTTAAGCCTGCAATGAAAGATGTAACTGTGCTGTCAAAGATTGGAAACATCAATGAGAAGAGTGGACCACCTGCTGAAGTGGCTGATGGTGGTTCAAGGTACAAGGCTACAAATTCTCTTCCAACTTTAAATGAGTGTTCACTAAGTAGGGCCAATCGACTGCAACAGAGTCATGTAATTGATGATCATGGGTTACAGAATGGTAAGGATGCTGATGAGTTTTTGAAGGAGTCGTCTCCTGGTTTTGATGTTCTCGTTGACGATGAACTGAGAGGCTCCGGTTATTATGGCAGTGAAGAACAGTATGGGAGAACAAGAGGTCATGAGGGAGGAAATATGATTTCTATGAATGATTATGACATCAGTCATTCTGCTGATTATAAGATAATGGGTGATGTTGATCGTGATGTTTATAATGACGTAACAGACTATGACTATGAAAGTAGGCAAGGGGGGCAGTATGGTTGGGACCAACGTAGGACCTCGTCTGATAAGCTGTCTTTGGGTTCTGCTCAGATGGAAAGGAGGCTCTTCCGGAAATCTAACAGTCCAGAACATGTTCAGAATGTGGATTTACGTCACCGTTTAAACAAGCAGAGAAGGGGAAATGGTTTGAGATCTGTGATCAATAATGAAAATGCTGCTAGTCGCCCTGAAGAACGAAACTACCGCTTGGCTAGGAGAGATTCTCACCCCTCTCAAGAAAGCACTGTGAGTAATCGTCTCCGAGGTAGAATAAAGCTCCCAAGAATACCATCTCCAGTTAGAAATAGTAATCTCCGCCCAGAAAGAGATTTGAACCGGGGAAGGCCCTGGGGAAGATCGTCACCGGGAAGGTCACAGTCCTTGTCTCATCAGGGAAGCAATAGAGATGAAATGAAAGGCAGACTAGAAGAAGATTATAACAATGACCGTAGAACTTACAATGGCCTTAATTCTAGGAGGGATAGAATGGATGGAACATCTGACTTTGCTGCTCCAAAGAGTCTGGCTGAGCTAAAAGGCGACAAACACGTGGTTAGCAAGGAGCAACAAACCCTTGGTAAAAGAAAAGGCTTTGATAACGAACAATCTGGAGGCGAACTGTCGTTTGAAGGACCGAAGTCTCTCAGTGAGATTCTTAAAAAGAAGAGACAAGTTAAAGCCGTTGTTGATCTTCCTATGAATAATGTTGAAAGAGAAAGCAGTGAAAGATCAATGGAACGCTCCACTACTCCCCCCTTGAAGCAAAGTGGTTTATCATCAACGGGTAAGCAGGAAGCAAATAGTCTCGATGGAATCAAGTTTGCTCCAGCTGAAAGTTTTGTGCAAGAAGAGGAAAATATCGATGTATCTCATCACCATTCTTCTCAGCCCACACATTCGACCGAGGACCACAGGATTGAAGCTTATGATGAAGCATTGGTGGAAGAGGACCAAGAGTATGAAGGCGATGATCAAAGAGATGATGGTGAATACGAGTATGAACAAGTCGATGATGGGGAATACAATTATGAAGAAGGCGAAAACATAGATCCTGAAGAAGAGTACATGGATGACGAAGATGGTGATGACTTCGCCAAGAAGATCGGCGTTATGTCATGATCACGGTCGCAATCACAAGTTGTGAAAGAAAGCGCAGATCACACATGCTCTTGCTGTGAACATTTTGTTTCTGAGGACTTGCGTATGGTCAGTTCAAGATTGAGCATGTATGTGAGCTGCCATGGATAAAATCTTCTGGACCAACAGCAAAGTGGAATTAATTCCTCTTGTATTAATTAGAACCCTCCTTTATTTTTAATCATTAATTATTTTTCCTGTTTTAATTATATTTTAATCCTGATTTGAGTGGGAGATCTTGGTTATGCATGAGGCATTTAGTTGTGCTCTCCAGTTGAAACAAAGTATAAGTATGTTGCTGAGAGTGAATGGTGTAACAGTAGAAAGTTAAATAAGATAATTGATATTCTTATCCCA 2541 43.13 MVGGGPQVLEQPPQSLPQPLSAAEEEAVKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWFWLNGNCLNPKCSFRHPPLDGLVGTPHSTTPSSQIPSQTSAIPSAPVNSSKQAVPCIFFQKGLCLKGDRCAFLHGPSPVPANKIPQMAANAQAGEPPSVKKVSGGTQRSSQEQKIPQANFLKLIGGSSVKPAMKDVTVLSKIGNINEKSGPPAEVADGGSRYKATNSLPTLNECSLSRANRLQQSHVIDDHGLQNGKDADEFLKESSPGFDVLVDDELRGSGYYGSEEQYGRTRGHEGGNMISMNDYDISHSADYKIMGDVDRDVYNDVTDYDYESRQGGQYGWDQRRTSSDKLSLGSAQMERRLFRKSNSPEHVQNVDLRHRLNKQRRGNGLRSVINNENAASRPEERNYRLARRDSHPSQESTVSNRLRGRIKLPRIPSPVRNSNLRPERDLNRGRPWGRSSPGRSQSLSHQGSNRDEMKGRLEEDYNNDRRTYNGLNSRRDRMDGTSDFAAPKSLAELKGDKHVVSKEQQTLGKRKGFDNEQSGGELSFEGPKSLSEILKKKRQVKAVVDLPMNNVERESSERSMERSTTPPLKQSGLSSTGKQEANSLDGIKFAPAESFVQEEENIDVSHHHSSQPTHSTEDHRIEAYDEALVEEDQEYEGDDQRDDGEYEYEQVDDGEYNYEEGENIDPEEEYMDDEDGDDFAKKIGVMS 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4778167 4781864 - XM_039036435.1 Bhi07g00087 38476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00087 721 MobiDBLite consensus disorder prediction 595 616 - -
Bhi07g00087 721 Gene3D - 21 85 - -
Bhi07g00087 721 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Bhi07g00087 721 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 18 721 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 529 550 - -
Bhi07g00087 721 SMART c3hfinal6 61 84 IPR000571 GO:0046872
Bhi07g00087 721 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Bhi07g00087 721 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Bhi07g00087 721 MobiDBLite consensus disorder prediction 529 560 - -
Bhi07g00087 721 Pfam Zinc-finger containing family 29 84 IPR041686 -
Bhi07g00087 721 ProSiteProfiles Zinc finger C3H1-type profile. 59 85 IPR000571 GO:0046872
Bhi07g00087 721 MobiDBLite consensus disorder prediction 157 180 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 1 21 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 483 516 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 579 711 - -
Bhi07g00087 721 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 18 721 - -
Bhi07g00087 721 Gene3D - 112 183 - -
Bhi07g00087 721 ProSiteProfiles Zinc finger C3H1-type profile. 29 57 IPR000571 GO:0046872
Bhi07g00087 721 MobiDBLite consensus disorder prediction 411 425 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 633 660 - -
Bhi07g00087 721 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Bhi07g00087 721 MobiDBLite consensus disorder prediction 91 110 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 342 362 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 348 362 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 661 709 - -
Bhi07g00087 721 MobiDBLite consensus disorder prediction 468 482 - -
Bhi07g00087 721 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 142 IPR000571 GO:0046872
Bhi07g00087 721 MobiDBLite consensus disorder prediction 392 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00087 - - - csv:116403891 1256.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01012 Bhi-Chr2:22886131 Bhi07g00087 Bhi-Chr7:4778167 3.33E-42 dispersed
Bhi02g01013 Bhi-Chr2:22886133 Bhi07g00087 Bhi-Chr7:4778167 5.62E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1079 . . . . . . . . Cmo04g01052 . Cma04g00976 . Car04g00917 . . . . Bhi07g00087 . . . . . . . . . . . . . . . . . . . . Cme10g01362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00958 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012053 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1461 PF15663 zf-CCCH_3 1.60E-11 CL0537 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00087 Bhi_Chr07 FPKM 1.704545 0.533201 2.228046 1.724004 0.0 1.491483 3.264225 2.828568 3.399343 3.557142