Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00089 TTTTCACTAGAAGAAGACGAAATAAGGGAGAAAGAAGTCTGCAGAGACAGAGCGGTGGCAGTGCAGAGATGGAAATGGAGCAGTACACACACATGCTTCTTGCTTTCTCTTCTGACTCTCACACTCATTTCCTCTTCCTCTTTCTAAGCTTTTGACTATGGATTCTCAATCTCCATCCAAAACCCTCTCTACCCATCTCCCCTTTCCCCAAATGTAGCCTTCAAACATTCTTCAAATCCCTTGTTTTCTTCCACTTTATTACATGGAATACGAGAGGATCCAGAAGCCTCAGGCTGGTGGTGGAGGGGGGTTTTCGCCTGGGAAACTTAGGAATATGTTGCTTGGGTTGGAGAAGAAGAGGAAGGAGGAGGAGGAACAGCTTGGATCCACTTACGATTTGAGATCTCAAGCATTGCAGATCGATGAGGCGGGCTGTAGCGGATCTGATATTTGCAAAGATGTGGATGTGGTCAGTGTTCTTCCAGAGTGCTCGACCTCAAAGAAAGCTGATTCACTGGTTTCGGAGATACCTAGTGAGCATAGATTAAAGGACAATGCTTATAATTCACGACTTAGGATGCAAGACGAGCCTTCTTTAGATTATGATAGTGGGCAGGATGGTTCAACTCTGCTCACTTCAACCTTTGAGTTTCAGAAGTCAGATAGGTCTGCACGAGTTCCCCTGGGACCCTTCTCTAAGCCAGCTCCATCCAAATGGGATGATGCTCAGAAGTGGATTGCAAGCCCTACTTCAAATAGACCCAAAACAGGGCAATCTCAGACTCAGGCTGGACAACCTTTTGGATCACGAAAACTAGGTATTGGTCTTGGGAGTCGTCAACCATCTTTGAAGGTTGTGGTTGAAGTTCCGGATCGAAAAGCGACTACTTTTGAGGAACCGGATACAAAGCAGATTGATAGTCACGAAGCTAACATTGGAAGTGCTGCCCAGAAGTTTGTTTCTTGGGATTCTAATCCATATGGAGTAGCAGATTCAAATGGCAAGCCTGTGTTGATGATTGAGAACTCTGTTGGAGAGTCAGCAATTAGTCTCAGCCAACATGATTCATCTCTGGCCGTTCAAACTGCAACGACATTTATTCCTCCTCCCACAACCGCTCGTTCTGTCTCGATGAGAGATATGGGTACGGAGATGACACCTATTGCAAGTCAAGAACCTTCCAGGACTGGAACTCCTGTGAGAGCAACAACGCCAATTCGTAGTCCAACTTCTTCCGTTCCATCAACTCCGGGGAGAGGTGCTCCAACTTCATCTCCGACCACTGCACCTAATGACCGTGTAGATACAAACAAAGAGTTGTCTGAGAAGGAGATACAGTTAAAAACTAGAAGAGAGATAGTTGTTCTCGGTACACAATTGGGGAAACTGAACATTGCTGCATGGGCTAGCAAGGAGGAGGAAGAAAAAGATGCTTCAACGTCACTTAAAACTGTTGCAACTGAACAACCAACTAAAAGTGTGATAGAAACACGGGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAATATATGGCTAGGTTCAAACGAGAAGAGATGAAAATTCAAGCATGGGAAAATCATCAGAAAGCAAAAACAGAAGCTGAAATGAGAAGAGTTGAGGTGAAAATAGAGAGAATAAGAGGACAAGCACATGATAGGCTTACGAATAAACTAGCAGCAGTGAGGCACAAAGCTGAAGAAAAGCTAGCAGCAGCAGAAGCAAAGAGAAACCGCCAAGCTGCAATAGCTGAACAGCAAGCAGATTATATTCGCCAAACTGGTCGAATTCCTTCTTTATTTTCTTGCTTCTATTGTTGCTCTTGAAATTTGATAGTGTTTCCACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTATGTATTGTATTCTCTATACTGTATACAAATTCCTGTTCTTTGCATTTGCATGGTTGCATGTTTTTGTTTCTATTTGAGCTTGTACAAATATATATTAGGGCTGTTAGATTTATTTTCCATATTCCATTTTTATGTTTTCAAAGAGGTGGAACAAATGTGCAATTTGGGGTAGGGGTAGTAAAAAACACCAAAGACTCGAAAACCTGATCAACACAACTCAATCCGTATGGTTCGAGTTAGGTTATCAACTCGTTTGTGTTGGGTTGGATACAAATAAATGAAAACCTTATGGGTTGGTTTGGTA 2187 42.62 MEYERIQKPQAGGGGGFSPGKLRNMLLGLEKKRKEEEEQLGSTYDLRSQALQIDEAGCSGSDICKDVDVVSVLPECSTSKKADSLVSEIPSEHRLKDNAYNSRLRMQDEPSLDYDSGQDGSTLLTSTFEFQKSDRSARVPLGPFSKPAPSKWDDAQKWIASPTSNRPKTGQSQTQAGQPFGSRKLGIGLGSRQPSLKVVVEVPDRKATTFEEPDTKQIDSHEANIGSAAQKFVSWDSNPYGVADSNGKPVLMIENSVGESAISLSQHDSSLAVQTATTFIPPPTTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPIRSPTSSVPSTPGRGAPTSSPTTAPNDRVDTNKELSEKEIQLKTRREIVVLGTQLGKLNIAAWASKEEEEKDASTSLKTVATEQPTKSVIETRAAAWEEAEKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEVKIERIRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRIPSLFSCFYCCS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4869583 4875356 - XM_039035442.1 Bhi07g00089 38478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00089 520 Coils Coil 468 497 - -
Bhi07g00089 520 PANTHER OS02G0116800 PROTEIN 15 516 - -
Bhi07g00089 520 Pfam Remorin, C-terminal region 408 511 IPR005516 -
Bhi07g00089 520 MobiDBLite consensus disorder prediction 1 21 - -
Bhi07g00089 520 MobiDBLite consensus disorder prediction 160 180 - -
Bhi07g00089 520 Coils Coil 442 462 - -
Bhi07g00089 520 PANTHER OS02G0116800 PROTEIN 15 516 - -
Bhi07g00089 520 MobiDBLite consensus disorder prediction 298 356 - -
Bhi07g00089 520 MobiDBLite consensus disorder prediction 160 189 - -
Bhi07g00089 520 MobiDBLite consensus disorder prediction 300 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00089 - - - csv:101221140 923.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02831 Bhi-Chr1:70254282 Bhi07g00089 Bhi-Chr7:4869583 7.07E-25 dispersed
Bhi03g00111 Bhi-Chr3:2989992 Bhi07g00089 Bhi-Chr7:4869583 2.60E-83 dispersed
Bhi04g00562 Bhi-Chr4:13440077 Bhi07g00089 Bhi-Chr7:4869583 5.07E-28 dispersed
Bhi04g00563 Bhi-Chr4:13440077 Bhi07g00089 Bhi-Chr7:4869583 5.07E-28 dispersed
Bhi07g00089 Bhi-Chr7:4869583 Bhi09g03316 Bhi-Chr9:85058973 2.78E-15 dispersed
Bhi07g00089 Bhi-Chr7:4869583 Bhi09g03315 Bhi-Chr9:85058965 2.46E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1078 . . . . . . Bma14g01623 Bma15g00051 . . . . . . . . . Bhi07g00089 . . . . . . . . . . . . . Cone13ag0667 Cone19ag0663 . . . . . Cme10g01363 . . . . Bpe11g01616 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00962 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009661 2 1 2 3 1 1 1 0 1 1 1 1 0 1 1 0 1 2 0 1 2 1 1 1 1 0 0 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00089 Bhi_Chr07 FPKM 19.213736 19.760031 23.101191 22.315138 29.148853 29.597454 32.483555 34.413017 35.978416 35.29887