Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00113 ATTTGTACGCTTTACCGCTTACAAAAAGTTGATCATACAATACAGACAATGTCTGCGGAAGCAAAACCCAGAATTGTAGGCGTATTCTTCGAAATGATTCAATAGCGGAACTGCAAGGCAAGGTGTAAAGCTTGAAGATCATGACGAACCCAAATCCCTTTTTCATCTTTACGGTTGTCCGTCTCATCTTTCTTGTATCTGGAATTCATTCCTATCCTTCAATTTGATTGGCTTCTTCAACACGCAAACCCCTCGTATAAGCAATTGCAGACGATTTGAGAATCGGGGGAGTTTTTCTTTTTCTTTTCCGCCGTACGAAAATGGATGACGAGGTGGTTCAGCGGGTTCTTCAGGAAGGCAGGGATTTCTACCAAAAACAACCCTCCACTTCCACTTCTTCCTCCTCCATCCTTCAATCGCTGCCTCTTCATGTGTCTTTCGATCATGGATATTATCTATTAGTGAAATCCATTCAAGAACTTAGAGAGAAAAAATATGGACTTGTAACAGTTGGCATTGGTGGTCCAAGCGGCTCTGGTAAAACCAGCTTAGCAGAGAAAGTGGCATCTGTAATTGGCTGTAATGTTATATCAATGGAAAACTATCGAGATGGAGTCGATGAGGGGAATGATTTGGATTCAATAGACTTTGATCTTCTAGTTCAGAATCTTGAGGATTTGACAAATGGAAAAGACACCATGATCCCAGTTTTTGACTTTCATCTAAAGAAACGGGTCAGTTCAAAAGTAATAAAGAGTGCTTCATCTGGGGTGGTAATCATTGATGGAACCTATGCATTACATGCAAAATTACGTTCTTTGCTAGATATTCGGGTGGCAGTGGTTGGTGGGGTTCATTTTAACCTTCTCTCCAAAGTTCGGCATGATATTGGAGATTCCTGTTCATTAGATTATCTTATTGATAGCATCTTCCCATTGTTTAGAAAACACATAGAGCCAGACCTTCATCATGCCCAGATAAGAATTAACAACAGCTTTGTCTCATCATTTAGGGAGGCAATATACAAGCTGAAATGTAGAAGTGAGTTCCCAGATGTACATTCTGCCCATCCTTTTCAAGGAAATAAAACGCATACAGACAATTTTATTGAGATGTATCTTAGGCCTCCATCTGCAAGTGAAGAAGCACGTATAAATGACTGGATTAAAGTGCGACAATCTGGTATTAAGTACTACCTCTCACTTGGTGACCAGAGGATAGTTGACAAAAATTTTATTATCAGACCTAAAGCTGAATTTGAGGTTGGACGGATGACTTTAGGTGGATTGCTGGACTTGGGCTATACAGTGGTGGTTGGTTATAAAAGGGCATCTATATTCGTAAATAAGGGCAATGTTTCTGTGTCACTTGAAACAATTGATTCTCTTGGTGAGACATTCATGGTGCTTCGAAGCTCAAATAGAAAAACAGTTGGAGAAGAAGTGTTGAGGATGGGTATCAGAGCATCTTGGATTACAAAGTCTTATCTGGAGATGATTCTTGAAAGAAAAGGTGTACCACGATTAAATACACCTCCACTTCTACCAAATACATCTCTGGCTAGTAACCAAGAAAAGGTTATCATTGCTCCCAGGCCTATCCGTGTTGCTTCAAATCCTGTTTCTCGACTTGAGGATCTTTCTCAGCCGTGGACCCGATCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACGTGGCAATTTATTAGCCCACCTCAGTCTGATAGTTTAGCGACTGATCCCGCCTCTTTCAGGGACTCTTTGAGGCTTGCTCCAATGCCGGATTCATGTGACCTTGACAGAGGTTTGCTTTTAGCTGTTCAAGCGATTCAGGCGTTATTGGAGAACAAAGGTCTTCCTATTATTGTTGGAATTGGTGGTCCAAGTGGATCAGGGAAGACTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTCGCTTGAAAGTTATTACAAATCAGAGCAAGTGAAGGATTTCAAGTATGATGATTTCAGCACACTTGATCTGTCGCTGCTATCCAAGAATATCGATGACATGAGAAATGGTCGTAGAACAAAAGTACCGCTTTTTGACTTGGAGACGGGTGCTCGAAGTGGTTTTAAGGAGCTTCAAGTTTCTGAAGACTGCGGAGTGAAGGGTAAAGTACCTTGTGTGCTAGGCTGGATCAGTACTGTCACAGTATTTTCTTTTGAAGCTGACAGTTTCTATAGTTCACAAATAATTTTTGAAGGAGTATATGCTTTACATCCGGACATCAGAAAATCACTCGACTTATGGATTGCTGTTGTTGGAGGTGTTCATTCGCATCTTATTTCTCGAGTACAAAGAGATAAATGTAAAGCAGGGTGTTTCATGTCACAAAATGACATAATGATGACAGTTTTTCCTATGTTCCAGCAGCACATTGAACCACATCTTGTTCATGCACATCTCAAAATACGGAATGACTTTGATCCTGTGCTTTCACCTGAGAGCTCATTATTTGTATTGAAGAGTAACAAGCAGGTTGCTTATCAAGATATACTCAAACTTCTTGAATCGTCAAAGGTTTGCAGTTCTATACAAAATTTCATTGATATATATTTGAGGCTTCCAGGAATTCCTTCAAATGGGCAGTTGACAGAGAGTGATTGCATACGTGTTAGAATTTGTGAAGGCCGATTTGCATTGTTAATACGGGAGCCTATAAGAGAAGGGAATTTCATCATTCAACCTAAGGTGGACTTTGACATTAGTATTAGTACAGTCGCTGGCCTTCTTAATCTTGGGTATCAAGCCATGGCTTATATTGAAGCATCTGCGTACATCTACCAAGATGGAAAGATTCTAATTGAGGTTGACCATTTGCAAGATGCTCCTTGTCCTTATCTACAAATAAAAGGGGTTGATAAAGAGGCTGTTGCAGCAGCTGGTTCCATGCTCGAACTGAATGAGTCGTATACTACAAAGAGCTATCTTCAAATAGTTTTGGAAAGTTTGCCAGTGAATCGGAGTTCTGGCCTAATCCATAATCATCAAGCTGCGAGGCTGCAAGAACTTGTGGAATTTATTCAATCTCAGGGAAGTAGTACAGCTTCAGAATCCTCCCCTAGTAGGGAGGCATCATCTCCATTGGAAGGAATCATTGAAGACATGCAATCTAGAATCAGAAGACTTGAACGATGGCTTGCAATTAATACGGTTTTGTGGACCTTTTTTGTTTCTGCCCTAGTTGGTTATTCGCTCTACCGAACCAAGCGTCAGTGATTGTGTTTTTTGCCGAGTGACTCGACTAGCTTACTTCCCCCCTTTTTATGCACGGTTTGGCTGAAGTTATCGACCTACATATACAGAAGTAACAAAAGAAATTAGATGATAGAAGTTATCGACCTAACCACAATAGCAACTTGTGCAAGCTCATTCTGAAGTGAACATAATTGAGTCTTGATGCCCGAAGCTTCACATTGAACTTTTGGAAGGTTTTATTTATCATTTCAAGCGTAAAATATATGCTATCCATTGAAGATAGTGTATAATATTCTCATTTGTGATATAAATGGAGCACCATTGTGTTCAGCCAGTGCCACATTTAAAAGCCATCCCATTTTTTCTTCCTCATTATATATGTGATTTTTGTGTACTCTTGTTGGCTCAA 3648 40.02 MDDEVVQRVLQEGRDFYQKQPSTSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKYGLVTVGIGGPSGSGKTSLAEKVASVIGCNVISMENYRDGVDEGNDLDSIDFDLLVQNLEDLTNGKDTMIPVFDFHLKKRVSSKVIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVHFNLLSKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSEFPDVHSAHPFQGNKTHTDNFIEMYLRPPSASEEARINDWIKVRQSGIKYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVGYKRASIFVNKGNVSVSLETIDSLGETFMVLRSSNRKTVGEEVLRMGIRASWITKSYLEMILERKGVPRLNTPPLLPNTSLASNQEKVIIAPRPIRVASNPVSRLEDLSQPWTRSPTKSQMEPVVATWQFISPPQSDSLATDPASFRDSLRLAPMPDSCDLDRGLLLAVQAIQALLENKGLPIIVGIGGPSGSGKTSLAHKMANIVGCEVISLESYYKSEQVKDFKYDDFSTLDLSLLSKNIDDMRNGRRTKVPLFDLETGARSGFKELQVSEDCGVKGKVPCVLGWISTVTVFSFEADSFYSSQIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKLLESSKVCSSIQNFIDIYLRLPGIPSNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAMAYIEASAYIYQDGKILIEVDHLQDAPCPYLQIKGVDKEAVAAAGSMLELNESYTTKSYLQIVLESLPVNRSSGLIHNHQAARLQELVEFIQSQGSSTASESSPSREASSPLEGIIEDMQSRIRRLERWLAINTVLWTFFVSALVGYSLYRTKRQ 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6949126 6982630 - XM_039036549.1 Bhi07g00113 38502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00113 979 PANTHER URIDINE KINASE 638 970 - -
Bhi07g00113 979 PANTHER URIDINE KINASE 475 609 - -
Bhi07g00113 979 PANTHER URIDINE KINASE 2 422 - -
Bhi07g00113 979 SMART AAA_5 513 694 IPR003593 -
Bhi07g00113 979 SMART AAA_5 60 210 IPR003593 -
Bhi07g00113 979 PRINTS Uridine kinase signature 514 531 - -
Bhi07g00113 979 PRINTS Uridine kinase signature 541 552 - -
Bhi07g00113 979 Gene3D - 513 720 IPR027417 -
Bhi07g00113 979 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 638 970 - -
Bhi07g00113 979 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 422 - -
Bhi07g00113 979 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 475 609 - -
Bhi07g00113 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 714 IPR027417 -
Bhi07g00113 979 Pfam Phosphoribulokinase / Uridine kinase family 64 222 IPR006083 GO:0005524|GO:0016301
Bhi07g00113 979 Pfam Phosphoribulokinase / Uridine kinase family 516 711 IPR006083 GO:0005524|GO:0016301
Bhi07g00113 979 Gene3D - 62 240 IPR027417 -
Bhi07g00113 979 CDD UMPK_like 516 714 - -
Bhi07g00113 979 CDD UMPK_like 63 225 - -
Bhi07g00113 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 227 IPR027417 -
Bhi07g00113 979 SUPERFAMILY CYTH-like phosphatases 750 886 IPR033469 -
Bhi07g00113 979 Gene3D - 729 891 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00113 - - - bhj:120081560 1872.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00113 Bhi-Chr7:6949126 Bhi07g00115 Bhi-Chr7:6949126 2.71E-54 dispersed
Bhi07g00113 Bhi-Chr7:6949126 Bhi07g00114 Bhi-Chr7:6949126 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1031 . . . . . . Bma14g01683 . . . . . . . . . . Bhi07g00113 . . Lac13g1620 Hepe01g0410 . . . . . . . . . . . . . . . Chy10g00122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00113 Bhi_Chr07 FPKM 178.797379 188.137207 237.662689 230.753983 86.597084 101.874359 82.855515 280.882812 288.93103 254.858353