Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00139 TCTAAAAAAGAGTCAAAATTCCATCCATTTGTCAAAAAAACTCCCCTGATTGAAGAGAAAGGCGACAAAGTTCCATTGATAGCCATTTGGAAAAAGCTTGAATTTCATAGTTCAGCGCCGACTTTGAAAAGCTTTCTTCAATCCATCGGAAAATCCTGTATGAAGTTTCGGATTGAAGAAGGAATTCTCAAATTCTGGTGCAAAATTACAGTATGATTCATGGTTCCAAGCATCATAATGCAGCAACAATCTTCTTCTGCAGTTTCCCCTCACCATATCACTCCTCCGCCTTCCTCTCTTAGGTCACCATCATCCACACCTCCCGCCGCCCACTCGCCACTGCCTCTCTCTTCTCTCACCACTCACGTCCCCAATTCCCACCGGGAGCCGCTGCCTCCTCCCCCATCCGACCATGTTGCCGGACCAGTGTTGCAATCCGCCGGTGATTCTGCTGTAACCATGGCTTGCCCTCTGGCCAGGGTTCGCTTGTCTGATATTGCCCCTTACGACGGCGCGCCTGGAGGCTCTTATGTGAGGGCGGTTGAGGCTTTGTCCGGATCTTTGACGAGGTATAATGCGGCTGTGATTGAATTGGAGAATGAAGCTGCTGCTCTCACTCGTTGCGGGCTTGAAGCGGCTAGGTTGTTTTTCAAGAGTAGGGCGCAGGGTGGTGGAAAGGGGCGAGGTGTTTATACGTATAGAGCTGGAAGAGCGGTGGAAGATTGGGATTCTTGTCCTCCATGTATGGCTGATATTTTTAGATGCATGGGTAAAGCAGCTCGGGCTGCCTTATGCGCAATAGCTAGGCATCTTCGTTTGAGAAGCGATGTTTTCAATAATTTGCTCGATGACACTCCACTTCCTGCTACTGATGTATCCTCATCAGTGCTGGTTGCAATGCACTTGCATAACAGCTCTTTGCACAATTGCAAGGGCTCTGTTGGAGGAGGAAAGTCAGCAATGAATGTTGAAGTTGAGAAGGGGTTATTGACATTGTTTTCCTCGGACAATCCTGGTTTACAGGTTTGTGATCCCAATGGTCGCTGGTACCTAGCAGACGCTATGTTGGCTCCGGCAGATCTGTTACTAATTACGGGCAAGGCACTTAGCCATGCGACAGCTGGCCTTCGGCCTGCTGCATCATATAGATCTGCTCCTGATCATTCCTTGGGCTCAAATTATGTTGGGAGGACTTCCCTTGCATTTAGACTCATGCCCCAGACCAATGCCATATTAGACTGTTCTCCCATTGCAGCAGCTGGTCATGTTGTTCCCCAAAGATATGGTCCAGTCTCTGTTAGCCAATTCATGGATGATCTTTCTGCTGAGGAAGATGTATTATGTACTCATCTGGATAAGGATAACAATTGTATAGCTCGAAATGATCAAAATAAGGAAGCCTCGCTAAGAAGTGTTCTCTCAGATCCATTATCAGGTGCATTCCTTGAGGATGCGATGTTTGTTTCATGTGGACATTCATTTGGTGGTCTCATGCTGAGGAGGGTCATTGAGACGTCAAGGTGCACCATTTGCAACTCAGAAATCGATGCTGGGTCTTTGATTCCTAATCTAGCACTTAGAGCTGCAGCTTCAGCTGTGAAGCATGAAGATGATAGGAGGCTATTCCACAATGCTGCTTTGAGGAAGCGTCGGAAAGAAATGGGCGACCAGATGGATCCAATTAGAAGATTAAACCGGGAAAATGGTGATATCACCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACTTCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGGACTGGAGAGAATGTTCGGTTGCAATACCGCTCTCTTAGGAAGATCTTGAACACGACACCAGCTAACGAGGATAGTTGTCCCTCGCAGCCACTTCAGCATGGTTGCCCATAAAAATCTCTCTTTCTCTGGTTGTTTATGATCATTAATCCAGAGCAACAGTATGATTTTCTCAAACTTGAGCTTCATAAGCCCTCTACGCATAAGGGATAAATAAGACCAGGCTTGGCAAAAATATATAGTTGCTCCGCCGGCAAGAGAATCCAAGTGCACTTCAGTTTCTATACTAACTTGCATAGTTTTAGAATGAATTCATTTTTGTAATAAAATTCTAACACGGTCACATTTATTCCAATGAAAATATAATAAATTAACATGAAAAATGGTCTTTTGATGTTA 2271 45.18 MVPSIIMQQQSSSAVSPHHITPPPSSLRSPSSTPPAAHSPLPLSSLTTHVPNSHREPLPPPPSDHVAGPVLQSAGDSAVTMACPLARVRLSDIAPYDGAPGGSYVRAVEALSGSLTRYNAAVIELENEAAALTRCGLEAARLFFKSRAQGGGKGRGVYTYRAGRAVEDWDSCPPCMADIFRCMGKAARAALCAIARHLRLRSDVFNNLLDDTPLPATDVSSSVLVAMHLHNSSLHNCKGSVGGGKSAMNVEVEKGLLTLFSSDNPGLQVCDPNGRWYLADAMLAPADLLLITGKALSHATAGLRPAASYRSAPDHSLGSNYVGRTSLAFRLMPQTNAILDCSPIAAAGHVVPQRYGPVSVSQFMDDLSAEEDVLCTHLDKDNNCIARNDQNKEASLRSVLSDPLSGAFLEDAMFVSCGHSFGGLMLRRVIETSRCTICNSEIDAGSLIPNLALRAAASAVKHEDDRRLFHNAALRKRRKEMGDQMDPIRRLNRENGDITIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANEDSCPSQPLQHGCP 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7660263 7699245 - XM_039035935.1 Bhi07g00139 38528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00139 588 Gene3D - 158 372 IPR027443 -
Bhi07g00139 588 Coils Coil 108 128 - -
Bhi07g00139 588 SUPERFAMILY RING/U-box 396 463 - -
Bhi07g00139 588 MobiDBLite consensus disorder prediction 1 22 - -
Bhi07g00139 588 MobiDBLite consensus disorder prediction 1 70 - -
Bhi07g00139 588 MobiDBLite consensus disorder prediction 31 52 - -
Bhi07g00139 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 464 IPR013083 -
Bhi07g00139 588 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 74 585 - -
Bhi07g00139 588 SUPERFAMILY Clavaminate synthase-like 169 364 - -
Bhi07g00139 588 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 74 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00139 - - - csv:101206682 1043.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00139 Bhi-Chr7:7660263 Bhi07g00141 Bhi-Chr7:7661065 0 dispersed
Bhi07g00139 Bhi-Chr7:7660263 Bhi07g00140 Bhi-Chr7:7660263 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1044 . . . . . . . . . . . . . . . . . Bhi07g00139 . . Lac13g1653 . . . . . . . . . . . . . . . . Chy10g00104 Cme10g01121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01011 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002937 2 6 1 0 1 1 2 1 1 2 2 1 2 2 2 1 1 3 2 1 2 2 2 2 3 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00139 Bhi_Chr07 FPKM 4.746835 0.0 5.785511 5.12347 3.793045 5.200661 5.282903 2.434928 4.904976 10.338699