Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00164 ATGACAAGAAAGAAAGTGAAACTTGCTTACATTGAAAATGACTCTGCAAGAAAGGCAACATACAAGAAGAGAAAGAGAGGGCTTATGAAGAAAATTAGTGAATTGAGCATTCTTTGTGGGATTGAGGCTTGTGCAATCATCTTTAGTCCCTATGATTCTCAGCCTGAGCTCTGGCCTTCCCCCATTGGAGTCCAACGTGTTCTCTCTCAATTTAAAAGGATGCCCGAGATGGAACAGAGCAAGAAGATGGTGAACCAAGAGACGTTTCTACGACAAAGAATTGCAAAGGCAAACGAGCAGTTGAAGAAGTTGAGAAAGGACAATCGAGAGAAAGAGATCACACGACTCATGTTCCAATGCCTCACTGCTACAAAAGAGTTGCATGGCATCAACATGCATGATTTGAATGACCTCGGTTGGCTCGTCGATCAGAATCTTAAAGAGATTGCTACACGCATTGAGTCTCTTAAAAAGCCTTCCATGGAGCTTCAGCTTCGGTCTCAGCCTCAGCCTCAACCTCAGCCTCCGTCTCAACCGTCGACCCAGCCGCAAACTGCGGCGTGGCTGATGGAGCTTGAGAGCCCTCAGGATCAAATGCGGTTTGTAGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACTACGATAATGCAATGTGGTCCAATGCCTTTTTCCCTTAG 687 45.27 MTRKKVKLAYIENDSARKATYKKRKRGLMKKISELSILCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKRMPEMEQSKKMVNQETFLRQRIAKANEQLKKLRKDNREKEITRLMFQCLTATKELHGINMHDLNDLGWLVDQNLKEIATRIESLKKPSMELQLRSQPQPQPQPPSQPSTQPQTAAWLMELESPQDQMRFVGDDMLLPFGDQTYNYDNAMWSNAFFP 228
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 9012917 9013693 + XM_039035383.1 Bhi07g00164 38553
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00164 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi07g00164 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi07g00164 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi07g00164 228 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Bhi07g00164 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 - -
Bhi07g00164 228 MobiDBLite consensus disorder prediction 161 184 - -
Bhi07g00164 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 187 - -
Bhi07g00164 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi07g00164 228 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bhi07g00164 228 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bhi07g00164 228 Coils Coil 87 114 - -
Bhi07g00164 228 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bhi07g00164 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00164 Bhi-Chr7:9012917 Bhi08g00789 Bhi-Chr8:26714182 1.15E-70 dispersed
Bhi07g00164 Bhi-Chr7:9012917 Bhi07g00165 Bhi-Chr7:9031156 5.34E-135 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1468 PF00319 SRF-TF 1.40E-18 No_clan Bhi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00164 - - csv:101203059 374.785