Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00165 ATGACAAGGAAGAAAGTGAAACTGGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACATACAAGAAGAGGAAGCGAGGGCTTATGAAGAAAGTTAGTGAATTGAGCACTCTGTGTGGGATTGAGGCATGTGCAATCATCTTTGGTCCTTATGATTCTCAGCCTGAGCTCTGGCCTTCGTCCAGTGGAGTCGAACACATTCTCTCTAGATTCAAGAAGATGCCTGAGATGGAACAGAGCAAGAATATGGTCAACCAAGAGAAATTTTTACGACAGAGGATTGCAAAAACAAACGAGCAATTGAAGAAGATGAGAAAGGACAACCGAGAGAAAGAGATCACAAGACTCATGTTTCAAAGCCTCACCGCTGCAAAAGGGTTGCATGGCCTCAACATGCTTGATTTGAATGACCTCGGTTGGGTCATCGACCAAAAGCTTAAAGACATTGCTATACGCATTGAGTCTCTTAAAAAGCCATCCATGCAGCTTCAGCTTCGGTCTCAGCCTCAGCCTCCGCCTCCATCTCAACCGTCACAGACTCAGCCGCAAAGCGCTGCGTGGCTGATGGAGCTTGAGAGCCCTCAGGATCAAATGCGGTTTGTAGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACTACGATAATGCAATGTGGTCCAATGCCTTTTTCCCTTAA 684 45.47 MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFGPYDSQPELWPSSSGVEHILSRFKKMPEMEQSKNMVNQEKFLRQRIAKTNEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWVIDQKLKDIAIRIESLKKPSMQLQLRSQPQPPPPSQPSQTQPQSAAWLMELESPQDQMRFVGDDMLLPFGDQTYNYDNAMWSNAFFP 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9031156 9031929 + XM_039035588.1 Bhi07g00165 38554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00165 227 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 194 - -
Bhi07g00165 227 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bhi07g00165 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi07g00165 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi07g00165 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi07g00165 227 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Bhi07g00165 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 - -
Bhi07g00165 227 MobiDBLite consensus disorder prediction 161 183 - -
Bhi07g00165 227 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bhi07g00165 227 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bhi07g00165 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi07g00165 227 Coils Coil 87 114 - -
Bhi07g00165 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00165 - - - csv:101203059 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00165 Bhi-Chr7:9031156 Bhi08g00789 Bhi-Chr8:26714182 1.28E-70 dispersed
Bhi07g00164 Bhi-Chr7:9012917 Bhi07g00165 Bhi-Chr7:9031156 5.34E-135 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1469 PF00319 SRF-TF 2.00E-17 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00165 Bhi_Chr07 FPKM 0.0 0.0 0.0 1.440117 1.869438 0.0 0.0 0.0 0.0 0.0