Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00260 TTTTTTTGCATGTTTCTTATTTCCACGACAAAAATGTAATTTTTTTTTCTAATTTGCCTTAAAAAATCAAAATTAATGTAAATTTCGAAGATGGTTGTACGAAAATCAGGAGGGGACAGAGTTTGTGCAGCAGTTATGGCCTTGTAGCTTCCACTCTGTCAATCACTTCTCAATGGATCCAACCTCCTACCGTAGTCGTAGAACCACCAACAAATCTGAGCTCTACTCCACAGTTGTAATCCATTCCAATTCTGATTCCGACTCCGACAACCATCCCGACGATCGGAATCCTCACCGTCGACGAAGGCCACCGAGCGAAGGACAAGACCTTTACGCTACAATGCTCTTTAAGGACGTTGATAAGCCCCGGGACGATGACGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTACCTAAGGATTTTGGTGGTGGAGCCCCAATTGACTACGAGGATGACCGTGCTTTTGATTTCGATCACGATAATGAAGACTTCGGTACCATGATCGTCAAGACAGATAGGAATCGTCCTCGAAATCGCTCCGTGTCTTCTTCAGTCTCGACCAAGCGTCGAACTTCGCCGTTACCGTTTATGCACTTTCAGCCGGGGAGCCCTGGGAAGAGAGGTGGCAGTGAAGAAGGCGATGACAGCGAGGAAGATGATGGTGATGGGTATTCTACCTTTGTGGTGAGGTCCACGGCGAGGTCGCGGAACAGAGAATCGGTTAGTGGGACTGTTGTTCGAAGGACCGGTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGATGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAACAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATGCGCAGTAAGGTGTCCTCGAGTTCGATTCCGGAAAGTATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTATTGTGGAGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCACTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCATAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTTATTGGCACTCCACATTGGATGGCTCCAGAAGTTATACAGGAAAGTCGATATGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCAATTGAGCCGGCTCCAATGCTTGAAGACAAAGAAAAATGGTCTTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCTCGTTCACGCCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGAGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCACATAATATTGCTCCAGATGCATCAGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAACATTGGACATCAGGTAGCAAATGAAATGGCAGCTGGTGGCACTTGGAGGAAGCAAGAGCAATCAGGCTCTGAACTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGGTATTGGCACTGCCGAACCACCAACGGGTTCCTTACGCAATGAGAGCCTATTCGTTAGTGTACCTAGAGTCGACTCTAGTGTGCTGGATCGTTCCGGAGGTATTGTAAATAATATTCTTGATGGGAAATCGGATCCCTCCATGCATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCATAGCACATCGAAGAATGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTCGGAGGCGTGCAGCACGACAATAGGGGTACTGTAGCAGTGGAGACGCTTCAGGAACTTTTCACTGGCGATGGACAATCAAGAAAGGGTCGTAGGGGTCAAAATGAGATTCCCCTTCCACCTAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTGCTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGTTTGTAGATTGTTTTACACTCGCTCTCTTATTATCGTCTCCCCGAAAGTTTGTTTTATCTTTCGCTTCCTTCATAATGTAAGAAAAACAATTTTTTAACCCTTCCCACTATGCCATTTGCTTGAAATTAGTTTGAGTGGTTACTAATGCCTGGTCTTTGTGCCATCATTTTGTTCA 2864 45.53 MDPTSYRSRRTTNKSELYSTVVIHSNSDSDSDNHPDDRNPHRRRRPPSEGQDLYATMLFKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDRAFDFDHDNEDFGTMIVKTDRNRPRNRSVSSSVSTKRRTSPLPFMHFQPGSPGKRGGSEEGDDSEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTGGSRSGSRDGGGGLDGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRMRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHNIAPDASGDGTIVAANLNQDYGDTVPSKPQNIGHQVANEMAAGGTWRKQEQSGSELVAEGTFGTVIVHDGDENDKVASQLGIGTAEPPTGSLRNESLFVSVPRVDSSVLDRSGGIVNNILDGKSDPSMHASSPSFLGIHEHSTSKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSRKGRRGQNEIPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12030821 12048924 - XM_039036564.1 Bhi07g00260 38649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00260 840 MobiDBLite consensus disorder prediction 174 197 - -
Bhi07g00260 840 MobiDBLite consensus disorder prediction 124 139 - -
Bhi07g00260 840 CDD STKc_MAP4K3_like 269 524 - -
Bhi07g00260 840 MobiDBLite consensus disorder prediction 29 49 - -
Bhi07g00260 840 Gene3D Transferase(Phosphotransferase) domain 1 266 559 - -
Bhi07g00260 840 Pfam Protein kinase domain 270 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi07g00260 840 SMART serkin_6 270 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi07g00260 840 ProSitePatterns Protein kinases ATP-binding region signature. 276 299 IPR017441 GO:0005524
Bhi07g00260 840 ProSiteProfiles Protein kinase domain profile. 270 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi07g00260 840 SUPERFAMILY Protein kinase-like (PK-like) 267 525 IPR011009 -
Bhi07g00260 840 MobiDBLite consensus disorder prediction 113 266 - -
Bhi07g00260 840 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 212 830 - -
Bhi07g00260 840 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 212 830 - -
Bhi07g00260 840 MobiDBLite consensus disorder prediction 23 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00260 - - - csv:101209775 1394.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00260 Bhi-Chr7:12030821 Bhi09g03448 Bhi-Chr9:87311110 1.51E-79 dispersed
Bhi09g03450 Bhi-Chr9:87311993 Bhi07g00260 Bhi-Chr7:12030821 3.20E-60 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g03449 . 1 689 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 9.3e-226 780.8
Bhi09g03448 . 1 690 MAP Kinase Kinase Kinase Kinase AT1G53165 63.6 2.3e-224 776.2
Bhi09g03450 . 1 601 MAP Kinase Kinase Kinase Kinase AT1G53165 60.5 2.7e-180 629.8
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 5.2e-67 253.4
Bhi09g03449 . 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 65.6 2.8e-230 795.8
Bhi09g03448 . 1 689 MAP Kinase Kinase Kinase Kinase AT3G15220 65.5 5.3e-229 791.6
Bhi09g03450 . 1 600 MAP Kinase Kinase Kinase Kinase AT3G15220 62.3 8.9e-184 641.3
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 2.3e-67 254.6
Bhi07g00260 . 3 840 MAP Kinase Kinase Kinase Kinase AT1G69220 58.1 1.4e-241 833.6
Bhi06g00519 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00521 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00523 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00520 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00522 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00524 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00517 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 9.7e-252 867.1
Bhi06g00518 . 1 547 MAP Kinase Kinase Kinase Kinase AT5G14720 69.2 8.8e-221 764.2
Bhi09g03450 . 1 191 MAP Kinase Kinase Kinase Kinase AT5G14720 50.5 2.6e-47 188.0
Bhi06g00518 . 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 65.4 7.7e-138 488.8
Bhi11g01446 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.8 2.3e-129 460.7
Bhi06g00518 . 7 544 MAP Kinase Kinase Kinase Kinase AT4G10730 50.4 1.0e-139 495.0
Bhi09g03450 . 1 182 MAP Kinase Kinase Kinase Kinase AT4G10730 50.3 3.0e-46 184.5
Bhi06g00518 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.9e-150 530.4
Bhi11g01445 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01446 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 1 672 MAP Kinase Kinase Kinase Kinase AT1G79640 60.9 3.1e-218 755.7
Bhi11g01445 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 2.2e-216 749.6
Bhi11g01446 . 1 625 MAP Kinase Kinase Kinase Kinase AT1G79640 59.3 7.9e-206 714.5
Bhi06g00518 . 6 544 MAP Kinase Kinase Kinase Kinase AT1G79640 53.1 7.0e-154 542.0
Bhi09g03450 . 1 184 MAP Kinase Kinase Kinase Kinase AT1G79640 51.3 2.4e-45 181.4
Bhi06g00519 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00521 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00523 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00520 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00522 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00524 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00517 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00518 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi11g01445 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01447 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01446 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87864 PF00069 Pkinase 7.70E-68 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00260 Bhi_Chr07 FPKM 56.77631 59.815723 42.236912 43.051544 56.241917 59.996716 57.961563 27.544512 26.943773 29.966568