Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00363 AAAGAGGAGTTTGTGCAAGCTGGCATTGGATTTTGAGTTTTCAATGGTCAAACAGTGAGTCAATCCATACGTTTATGCCCTTTGTATTCAATCTTTGTTTCTATATTCTTCAAATTTCAATTCCCAATTCCCAATTTCTCTCTCTCAGTTAATTATCATATCCAGTTTTGATTCTATCATTTCTTCAACTTTCCTCTAAGTTTCTTGTTTTCGATTCGATTCCATTCGATTCCGCCTGTTTTTCGCTGTTTCTAACTCCATGGCCTAGACGAGCATGACGAAATCCAAGAGTTTGATGCACAACATCATGAGACAATTCAGATTCGGTTCCTCAAGAGACAGGCAGGGCGAGGATGATTTGGAGGAGATTGCAGCTAAGGAACAGAAGGTTATTCAATTTGAAACATTAGTTGAAGCTACCAACAATTTTCACCAGAATAACAAGCTTGGCGAAGGCGGATTTGGTCCAGTTTACAAGGGGAAGTTAAAGGATGGAAGAGTGATTGCAGTTAAGAAGTTGTCGCATTATTCAAAACAAGGAAGAAAAGAGTTTATGACTGAGGCTAAATTGTTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTGTGTGCATGGTTCAGAGAAACTACTGGTTTACGAATATGTCACAAATGAGAGTCTTGACAAGCTTCTCTTCAAATCCTGCAGACGAGGAGATCTTGATTGGAAGAGGAGGTATGACATAATCTTTGGCATAGCACGAGGTCTGCAATATCTTCATGTGGACTCACATAATGTCATTATCCATCGTGACATAAAGGCTAGTAACATCTTGTTGGATGATAAATGGGTCCCTAAGATTGCCGATTTTGGGATGGCTCGTCTCTTCCCTGAAGATCAAACTCACGTCAATACTCGTGTTGCCGGTACAAATGGATATATGGCTCCCGAATATGTAATGCACGGGCATCTATCAGCCAAGGCAGACATTTTTAGCTTTGGTGTTTTGGTTTTGGAACTTATAAGCGGCCAGCGAAATTCGTCATTTAGTTCATTTATGGACGCCGAGAATCTACTTGATTGGGCTTACAAGCTATACAAGAAGGGCAGGAGCTTGGAGATCATGGACCCAACATTAGCTTCATCAGCTGTTCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTATGCACACAAGGTGATCCAAACCTACGGCCGACTATGCCACGTATAGTTTTAATCCTTTCAAAGAGACCTGGTAATTTGGAGGAACCAATGAGACCAGGAATACCTGGTTCTCGGTATAGAAGACCTCGTAGGACAAGTGCATCGTCCTCCAATGCTGGTGTGTCTGGAACTTCTGGTTCATCCGACTCCTATGCTCTTACAAGCAATACTACTGGGACTATAACTGCTACCGCAACCGCAACCGCAACCGCAAATGAAGTTGCTTCTGGCTCTTCTTCAATTAGTCGAGGATACGATACTCATGGGAAACGTCCGATAGAAGGTTAGACCCCATTTCTAATAGGATCATTCTTTTTGTTCATAAGTTTTTGTATCCTTAGTTACATTAGGATGTAAATGTTGAGGTGGAAAGTTTCTGGTCAAAGTAGTTGGATGGATTCAATTCAATTTCTTATCACATTTTTTGTACAGTAAGTTAGCAGTTTTAGGTTCAATCCCCAATGTAAAAAGAATTTAAATAAATAAATCTGTACATCTGCAGTAATGTATTTTCAGCAAAAACAGTTTAGTTATCACTAGTTTGATGCTAGTTTTAATTTGGCCAATTGTATTATATTTAAATCTTCCGAAGAATATATATATATATATATGCAAGCCA 1841 39.76 MTKSKSLMHNIMRQFRFGSSRDRQGEDDLEEIAAKEQKVIQFETLVEATNNFHQNNKLGEGGFGPVYKGKLKDGRVIAVKKLSHYSKQGRKEFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKSCRRGDLDWKRRYDIIFGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADIFSFGVLVLELISGQRNSSFSSFMDAENLLDWAYKLYKKGRSLEIMDPTLASSAVPDQVTMCIQIGLLCTQGDPNLRPTMPRIVLILSKRPGNLEEPMRPGIPGSRYRRPRRTSASSSNAGVSGTSGSSDSYALTSNTTGTITATATATATANEVASGSSSISRGYDTHGKRPIEG 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16261956 16267093 - XM_039037405.1 Bhi07g00363 38752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00363 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Bhi07g00363 411 MobiDBLite consensus disorder prediction 384 411 - -
Bhi07g00363 411 MobiDBLite consensus disorder prediction 384 401 - -
Bhi07g00363 411 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Bhi07g00363 411 MobiDBLite consensus disorder prediction 329 371 - -
Bhi07g00363 411 Pfam Protein kinase domain 52 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi07g00363 411 CDD STKc_IRAK 58 324 - -
Bhi07g00363 411 SUPERFAMILY Protein kinase-like (PK-like) 38 339 IPR011009 -
Bhi07g00363 411 MobiDBLite consensus disorder prediction 345 371 - -
Bhi07g00363 411 Gene3D Transferase(Phosphotransferase) domain 1 128 331 - -
Bhi07g00363 411 SMART serkin_6 52 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi07g00363 411 PANTHER RECEPTOR-LIKE KINASE 3 369 - -
Bhi07g00363 411 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 369 - -
Bhi07g00363 411 ProSiteProfiles Protein kinase domain profile. 52 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00363 - - - csv:101205738 723.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00363 Bhi-Chr7:16261956 Bhi08g01766 Bhi-Chr8:50887997 4.69E-110 dispersed
Bhi07g00363 Bhi-Chr7:16261956 Bhi07g00364 Bhi-Chr7:16261956 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g462 . . . . . . Bma14g01896 . . . . Cma04g00066 . Car04g00063 . . . Bhi07g00363 . . . . . . . . . . . . . . Cone19ag0750 Cone6ag0386 Cone9ag0413 Lsi04g01120 . . Cme10g01593 Blo06g01008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01147 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004445 0 2 2 3 1 0 2 0 0 0 1 0 2 1 0 2 0 2 2 0 1 0 0 0 0 1 0 1 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87869 PF00069 Pkinase 6.70E-50 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00363 Bhi_Chr07 FPKM 7.502038 9.422828 6.853189 6.445802 15.717089 16.094446 14.892924 1.030497 0.862865 0.786954