Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00405 TCCATTTTCAGGTTCTGACGGAAGAAAGAAAGCGGCGAATGCCAATGGCGAAAAACGATGATGAACCGGAGCTTCAGAGCTCCGGCAAGAGGCTAAAATGCTCTAAGCATGATGATGAACAACACCTCGGTAATGAAGAAGAAGAAGAAGAAGAGCAGGTGAGTGAGCTTCCATTGAAACCAGGGCTTTTCTTCTACCCAATGACACCAACTTCCTTCGTCGTCTCCGATGCTCTTGAGCCCGATTTCCCAATCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATACCGTGCCGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAATATAGAGATCCTCGTGCACAAAGGCGTCACCCTTTGGTAGATCCGGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGTGTTGAATTCCAAGGTGAGCTCCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAATAGGTTACGGCTTGCACCCATACATGATGATGACGGGACTGTAACACACATTATAGGAATTCAAGTGTTCTCCGAGACAAAGATAGACCTTAATCGGTTGTCATATCCTGTCTTCAAAGAAAATTGTGCCATAAAATATAATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCATTTGGTCACCATAAAGAAATCTGTGGGATACTACAGCTTTCCGATGAAGTCTTGGCCCATAACATTTTATCACGCTTGACACCACGAGATGTTGCGTCTGTTGGATCAGTGTGCCGAAGGATTCGTCAATTGACGAAGAACGAGCATTTACGGAAGATGGTATGTCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTTTGTTGGAGAAAAATGACAGTTGGGGGAGCCGTGGAGCCCTTACGCTGCAACTTTAGTGCTTGTGCAGCAGGTAATCGACTGGTATTATTTGGTGGGGAAGGAGTCAATATGCAGCCCATGGATGATACTTTTGTTCTCAATCTTGATGCTGCAAATCCCGAGTGGCGCAGAGTAAGTGTGAAATCCTCCCCACCTGGACGTTGGGGTCACACTCTATCATGTTTGAATGGTTCTTGGTTAGTAGTTTTTGGTGGATGTGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCTCAGCAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCGAAACTGGTTGTTTCAGGTGGATGCACAGATGCCGGTGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGATAAGCCAACCTGGAGAGAAATTCCCACATCCGGGACTCCCCCATCTAGATTGGGACATTCTCTCTCAGTTTATGGGCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGTTTACGATCAGGCGAGGCGTACACCATAGATTTAGAAGAAGAAGAACCCCAGTGGAGGCAACTCGAGTGCAGTGCATTCACTGGCATTGGCGGTCAGAGTGCTGTGGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCTTGTGGAAGGATAATCATTTTCGGAGGCTCCATTGCCGGGTTACATTCACCTTCTCAACTATTCCTTTTGGATCCGGCCGAGGAGAAGCCGTCATGGAGGATTCTCAACGTTCCTGGACAACCACCTAAATTTGCTTGGGGCCATAGTACTTGTGTGGTTGGAGGGACAAGAGTTTTGGTATTAGGCGGCCACACCGGAGAAGAATGGATACTCAATGAATTACACGAACTCTGCTTAGCTAGCAGGCAAGATTCAGATCTTTGATTCTATGTTAATCTGGCAGCAAACATTCCAAAGGAAAAAGTTGCTTCAAAGTTTCAAACCAACCAGTTGAGACCCCTCATATTATAGCACTGTAAGAACAAAATTTGCCCACTTCTTAGCTGTATTATGATTTTGTTTTCTGTTTTTCCTTTTTCCTTCTTTTTGGTTTGTGTTTAAATTTTGGTCTTCTTCTGTATATATTTATAAAAATATAATATAGGTTGTGTTTTTTTCCCCCATTTCTTACCTTACTTTTTGGTTCTGTATTTTACCTCTAATTGACCATGTGTCTACTTTGTATTGAGAAGCACTTTCTGTGTAAATGTAGATGCTTTCTCTTGCTTTGCGGAGTTTTTTGTTTTTTCTTTTCCCCCCCGACAAACAGGACCTCCATTTTTGTTTGGATATGTATTTACTTTGGAAATAACAATTTTGATCTCCTAT 2372 44.14 MPMAKNDDEPELQSSGKRLKCSKHDDEQHLGNEEEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKENCAIKYNLSGKSAHLIDQSPFGHHKEICGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTKKLGWGRLARELTTLEAVCWRKMTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPQWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18283693 18287014 - XM_039036691.1 Bhi07g00405 38794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00405 629 MobiDBLite consensus disorder prediction 1 30 - -
Bhi07g00405 629 CDD PAS 56 166 IPR000014 -
Bhi07g00405 629 PANTHER ADAGIO PROTEIN 3 11 626 - -
Bhi07g00405 629 Pfam Galactose oxidase, central domain 310 360 - -
Bhi07g00405 629 Pfam Kelch motif 534 581 IPR011498 GO:0005515
Bhi07g00405 629 ProSiteProfiles PAS repeat profile. 72 127 IPR000014 -
Bhi07g00405 629 Pfam Galactose oxidase, central domain 375 420 - -
Bhi07g00405 629 Pfam Galactose oxidase, central domain 424 475 - -
Bhi07g00405 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 11 626 - -
Bhi07g00405 629 SMART pac_2 131 172 IPR001610 -
Bhi07g00405 629 SUPERFAMILY Galactose oxidase, central domain 297 614 IPR011043 -
Bhi07g00405 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 167 IPR035965 -
Bhi07g00405 629 MobiDBLite consensus disorder prediction 1 41 - -
Bhi07g00405 629 Gene3D - 512 628 IPR015915 GO:0005515
Bhi07g00405 629 SUPERFAMILY F-box domain 211 268 IPR036047 GO:0005515
Bhi07g00405 629 TIGRFAM sensory_box: PAS domain S-box protein 71 166 IPR000014 -
Bhi07g00405 629 Pfam PAS domain 66 167 IPR000014 -
Bhi07g00405 629 Gene3D - 211 260 - -
Bhi07g00405 629 Gene3D - 290 511 IPR015915 GO:0005515
Bhi07g00405 629 Gene3D PAS domain 54 178 - -
Bhi07g00405 629 Pfam F-box domain 216 256 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00405 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - csv:101222712 1261.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01252 Bhi-Chr6:37000162 Bhi07g00405 Bhi-Chr7:18283693 0 dispersed
Bhi07g00405 Bhi-Chr7:18283693 Bhi10g00628 Bhi-Chr10:13622539 2.15E-14 dispersed
Bhi07g00405 Bhi-Chr7:18283693 Bhi10g01273 Bhi-Chr10:29695549 1.79E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00405 Bhi_Chr07 FPKM 82.957329 88.009407 1.807573 2.084547 3.280152 3.15433 4.021751 1.869956 1.875704 1.658118