Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00452 TTGCAGCAATTCCTCCCCATTTCGAAATTTGTTTCCATCGTTCCAAAGAACACACAGCCATCTGACCAAACTCAGAACTCCCCTCTTCCGTTCTTCACAGCCTCACTATCTCTCAAATTCTCAAATTCTCCAATTCCCAATTTCCTTCATCTTCCCCTTTTCCATTTTCAAGCAATTCCCACCTTCCTCAATCCTTCTCTCCCAAAACCCACCATGGCAAATTCTCCCTAACACTCAATTTTCAATTCCATTCCAACCCCCAAAGCTCACAATGTCCTCCGAAGACATCAATGGCCTCAACTCCCACCTCGTCTTCCAAGATGAAGCCCTCCCCTTCAATTGCTCCACCACCCCACAGCGCCGCGTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGATAAGCTCTTCCCTGTCGTCGACCGGGATCGATTCTTTTCCCACCAGGGTGAAGATTTCCGCCGCAGTGTGTTCGGTCACACCCGGAATTGGAATGGGAATGAGACTGCGAGAAGTGGGAAAGGATCGGATGAGGAAGATGACGACGACGACGACGATGAAGATGAAGTCAATGATGGTGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTTAATAAATGCAGTAAAACTGCTAACCCCAATGATAGTAACAATGATAGAAGTGATCAGAGTAGTGGGGGGTTGAAGAATGGGACTATTAAATTGGGAAATGGGAAGCTTAAGCACCATTCTTCTTTTGGTGGAACTCTGGTAGTCAAGGATGGTTTGGTTGGCTCTTCAGGCAACGACACAGGAGCAACTCAGAGTGAGAACCATCCACAGGGAAGGTTGGGGAACTACCCAAATGCGGTTACAATTGCAGAACATGAAGGGGATGCTTATTATTCCCAGTATTTGCAAAGCACTGAAGGGTCTGCTTCTGGGCAGAAGGATTTGGCTATGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGTTTTCAGGAGAGCCTGGAGAGTCTTTGCGAGCAATTCTCACTGACCCTGTGACGGGCGCTCTCATGGACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAATTATTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACTTGACTTTCATGGATACTCCAAGAGGTCGAGGTGTTCAGTTTCCTTTCACAGTGACTGATAGGGTAATTATCAAGGGGAACAAGAGGACACCACAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGCGTAAAATTGCAGTACCGCTCGCTTGCGAAGGTTCCAGATGATGCAACATCAAAGACGATAACAAGGAAGTTCACACCGAATTGGCTTTAGCCTTGCAATATAGATTATAGGAACTTGAACTCAAGATGCATTACGAGCCTAGTTTTTCGAGGCTCATTATGTTGTATTTATAACACACAAAGGGAGTGATATGTAGGTGTTGTAAATATGCTTAAAACAAACATTTTCCATAGTTGAGGGGGGAGGTAGAATTGAGTTTTGTGATAGAAAATGCTTTAGGTTTTCTATATCAGGTGATTAGCTTTGTATTTAAGTACAGAGGCTCACCTAAATTTTGAGACTTATGTAATGGAATTTTGGTAGTGTGTGGTTTGGAGGCTTAGATGATTTTTCAACATTCACTTA 1867 44.83 MSSEDINGLNSHLVFQDEALPFNCSTTPQRRVPDPPPKTRELCGFMDDKLFPVVDRDRFFSHQGEDFRRSVFGHTRNWNGNETARSGKGSDEEDDDDDDDEDEVNDGDDDVEGLVSLDDVNKCSKTANPNDSNNDRSDQSSGGLKNGTIKLGNGKLKHHSSFGGTLVVKDGLVGSSGNDTGATQSENHPQGRLGNYPNAVTIAEHEGDAYYSQYLQSTEGSASGQKDLAMENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDLTFMDTPRGRGVQFPFTVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPDDATSKTITRKFTPNWL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19850229 19854998 + XM_039037037.1 Bhi07g00452 38841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00452 426 ProSiteProfiles U-box domain profile. 250 322 IPR003613 GO:0004842|GO:0016567
Bhi07g00452 426 MobiDBLite consensus disorder prediction 91 114 - -
Bhi07g00452 426 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 42 426 - -
Bhi07g00452 426 MobiDBLite consensus disorder prediction 73 152 - -
Bhi07g00452 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 321 IPR013083 -
Bhi07g00452 426 MobiDBLite consensus disorder prediction 121 147 - -
Bhi07g00452 426 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 42 426 - -
Bhi07g00452 426 SUPERFAMILY RING/U-box 250 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00452 - - - csv:101213937 717.613
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00142 Bhi-Chr7:7661065 Bhi07g00452 Bhi-Chr7:19850229 8.58E-43 dispersed
Bhi07g00143 Bhi-Chr7:7661065 Bhi07g00452 Bhi-Chr7:19850229 8.58E-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01630 . 3 729 Plant U-box Gene Family AT5G57035 52.7 3.4e-224 775.8
Bhi06g01161 . 426 715 Plant U-box Gene Family AT5G57035 56.9 2.3e-95 347.8
Bhi07g00452 . 199 426 Plant U-box Gene Family AT5G05230 57.3 3.0e-66 250.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00452 Bhi_Chr07 FPKM 1.606411 2.515747 0.574693 0.462497 0.242402 0.0 0.599018 0.317935 0.592144 0.269354