Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00911 AGAAAAGAAACCCTACTTCCTTTATCTCTTTTCTATCTTCTTTCTTTCTTTCTCTCATTTCTGAGCAAGTCTCTCCCATTGATGTGATTCTCCACCATCAACAAACTTTTGCTCAAAAGAGAAAGCTCTTCACAAGAATTATAACAATACTATGGTTTTTCCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCATTGACTAATCACCAGACGGGAGGAAATGATACTGCAGAGGATTCTGGTCAGGTTTTACTACCTCCGCCACCTGGTGGTGGGGGAGGAGGTGATGGTGGTGGTGTTGGAGGTGGTACTGGGTCGATTAGGCCGGTTTCAATGACCGATCGAGCTCGTTTGGCGAAGATTCCGCATCCAGAGGCTGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGACGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTGGGCGGTGGCTGTCGGAGGAACAAGAGGACCAAATCCCGGAATCGGTCGAAGTCTCCGGCGGCCGGTGAACGTCAATTATTAGGTGGATCAACTAATTCTACTGCTGGGGTTTCACTTTCAACCCAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTACGGCCTCAATTTGGGGATAATTCCGCCGCAAACTCCGCCAACAAGCGGTGGCTCCACCACCGGAGGATTGGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACAAGTACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACATTCGAGCCACCCGAAGGCGCCATGGCTCGGTATAATCTCGGCGGGTTCTCGAGATTAGGGATTGAAAACGACATTGGAATGACGATGGAGGCCGGGGCAATGAAGGTTGAGGAGAGTAAAGGGATGAACTTGGGGAAGAATTTTCAGTTTTGGGTCGGTGGCGGTGGTGGAAGCGACGTTAATGCATGGAGTGGCAGCAGTGGCGGCGGCGATCTTCATGGCTTCTCCTCATCCTCCGCCAGCCACTTATTGAGATAGTAATTTTTCTCAATCCTTTTGAACTTCTCTTTTTGTTATTAAAATGTTCACTAGGAAAAAGAAAAAAAAAAAAAAGAAAGAAAGAATTGAAACCAATCATATCATATTAAAGGTTTTCAATGCTGAACTGTGACTAAAAGAGAGCAAAGAAAGTGATGATCAAAATAGAAAAAAAAATGATGGACCTGTCTAGGGTTTCAGGCTTTATCTAAGGGTTTTTTTCTTTTTTTTTTTTTCTTTTTAATTTTAATTTTAGAATTTTGGATGGTGCATGGTTGATTAATCACTATAGGGTTTCTCTTATATATGTATATCATTGGGAAGGTAGTCTTTTGTAAGTTTAGGGGGTGACAATATATATATATATTTACAAAGATGACCTATATATATAAATTATTATGTTTAATGTTATAA 1537 41.57 MVFPSLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGGDGGGVGGGTGSIRPVSMTDRARLAKIPHPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAAGERQLLGGSTNSTAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIPPQTPPTSGGSTTGGLDVHEFQGDHWRLQQVPQQFPLLANDQQPNLLYTFEPPEGAMARYNLGGFSRLGIENDIGMTMEAGAMKVEESKGMNLGKNFQFWVGGGGGSDVNAWSGSSGGGDLHGFSSSSASHLLR 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30616198 30617941 + XM_039037516.1 Bhi07g00911 39300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00911 323 MobiDBLite consensus disorder prediction 1 57 - -
Bhi07g00911 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 301 IPR045174 GO:0003700|GO:0006355
Bhi07g00911 323 Pfam Dof domain, zinc finger 80 134 IPR003851 GO:0003677|GO:0006355
Bhi07g00911 323 MobiDBLite consensus disorder prediction 12 30 - -
Bhi07g00911 323 MobiDBLite consensus disorder prediction 124 160 - -
Bhi07g00911 323 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Bhi07g00911 323 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 301 - -
Bhi07g00911 323 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00911 - - - csv:101220381 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00298 Bhi-Chr4:6942574 Bhi07g00911 Bhi-Chr7:30616198 4.85E-32 dispersed
Bhi07g00911 Bhi-Chr7:30616198 Bhi11g02243 Bhi-Chr11:61405297 1.56E-56 dispersed
Bhi07g00911 Bhi-Chr7:30616198 Bhi08g00621 Bhi-Chr8:20475529 2.08E-69 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT1G29160 59.7 6.0e-44 174.9
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT1G29160 51.4 3.4e-39 159.1
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT2G34140 54.1 1.6e-41 166.8
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT2G34140 50.3 3.6e-38 155.6
Bhi11g02243 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.0e-41 166.4
Bhi07g00911 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 63.8 6.4e-39 159.1
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT2G37590 57.0 6.0e-37 152.5
Bhi12g00102 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 4.0e-44 176.4
Bhi11g02977 . 133 514 C2C2-Dof Transcription Factor Family AT5G39660 50.6 1.6e-80 297.7
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.8 3.1e-40 163.7
Bhi11g02243 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 8.7e-37 152.1
Bhi02g00056 . 48 347 C2C2-Dof Transcription Factor Family AT5G60850 53.4 9.1e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1520 PF02701 zf-Dof 4.40E-32 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00911 Bhi_Chr07 FPKM 58.02924 60.32671 42.166344 43.508064 32.985306 34.814838 33.191906 24.827835 24.588102 24.422773