Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g00980 CACCTTTGCAAAAAAAAAGTATAAACATAATGCAATGTTGAGTCAGTCAATGATATTAGTCTAAGAATGCTGGTTGAAATCACCTCCTCTTGTTCCTTCCTCCTCTATAAATCTCTTCTTCTCGCATAGCCATAGCCATCTCTCAGAGCTTTCTCTCTCCTCTTTCTCTCTCTAATCTTACAATCATCTCTCCCAATTTCAATTCCAATGATACTCTCAGAGCCCCCAAAGAGTAACACCACCACCAAATTAATGCACATCAAAGAATTCTTTGGCTTCTCCCACTCCTCTTCTTCAAAATCCCTCCACTCCTCTTCTTCCTTTCCCATCTCCGCCCACCGGAGACTCCCGCCGTCAAGCTATGACCCTTCCGAGTCGGCGGCCATGGAAGAGGCCATAATTAACTCCGAACCCATCATCACGAAATGGGACCCGGATTCTTCTGAGTTCAATAGAATCACCTTCCTCTTCCGCCATGGCAGAGCCGAATCCGGCGAGTTCATTGACTCCGTCAATAGCCTCCGACAGGCAATGGACTTTTTTATATCGGCAAATTCCACTTCATCCGTCCTTGTTATTGCTCAGAAGTTGATGCAGGCCGCTATGAGAAGATTGGAGAAGGAATTTTACCAGATTTTGAGTGAGAATCGCCAGAATCTAGACCCCGAATCCATCTCCAGCAGATCCTCTGACCGGTCGACGGCTGATGGGGAAACCGGTGGGGATTCCATTACCGAGTTCGATAGAGTTTCGGCTGATTTGAAATCGATTGCGGATTGTATGATTGATTCTGGGTATGGGAAAGAGTGTGTTAAAATCTATAAAGTAATCAGAAAATCGATTGTTGATGAAACTCTGTATCGCCTTGGAACAGAAAAATTCAAAATTTCGAGAATTCTGAAATGGAATTGGGATTCGCTCGAGCAAATAATCAAGAATTGGATGAATTCGGTTAATATCGCTGTGAATACACTGTTTCGTGGCGAGAGATTTCTCTGCAACCATGTTTTTTCGAGATCGGAAAGAATCAGAGAGTCCTGTTTTTCTGAAATCACAAAAGATGGTGCAATCACTTTGTTAAAATTCCCGGAACTGGTAGCAAAAGGGAAGAAAGATTCCGACAAAATCTTTATATTAATGGAGCTTTACGAAGCGAATTCCGACGTATTGCCGGAAATTGAAGTCATATTCGACTCTGTTTCAACATCCGACATTAAAACCCAAGCTCAAACGTCGATGACGAAACTCGCTGATTCAATCCGTGACATTCTTTCTGAATTTGAAATAACAATTCAAAAAGATTCATCCAAAAATCCAACCCCCGGCGGCGGAATCCACCCACTAACCCGATCAGCGATGAGCTACATCTCGTCTCTCGGCGACTACGCTAGCACCCTCTCCGACATCCTCACCGTCGAAAACTCTCCAATTCCGTCGTCGTACCTGGAGACCATCGCCGCCGACGACGCACTGTCGTCGCCAGTGGCAGCGCAACTCGGGTGGCTAATTCTAGTCCTCCTCTGTAAACTAGACACAAAAGCAGAGATGTACAGAGACGTATCATTATCATACTTATTCCTAGCGAACAATTTGAATTTCATTGTGAAGACGGCGGCGACGACGAATCTCAAAACACTAATCGGCGTCGAGTGGGTGGCGAATCACAGGAGTAAAGTGAAGGTGTATGCGGCGAATTATGAAGCGACGGCGTGGAACAGAGTGATGAAATCGTTGCCGGAGAGAGGGTCGGAGGAAGTGGGGTCGGCGGAGACGGCGGCGGAGGGGTTCAAGAGTTTCAATGCGGCGTTTGAAGAAGCGTATCGGAAGCAAACGTCGTGGAGAGTGGAGGATGGGAATTTGAGAGATGAATTGAAAATGTCGATAGCGAAGAAAGTTGTGCCGATTTACAGAGAATTTTACGAGGGGTGTCTTGAGAAAATGAATGTGAATGTGGGTGTTGTGAGATTTTCACCGGATGATTTGGGGAATTATTTGTCGGATTTGTTTCATGGAGTTTCTTCATCGGCAAGTTCCTCTTCTTCTTCTTCACGGTAATGCGTAAAGGGGAGGAAGAAAGTGATGAGGTGGCCTTACATGATACGTCCACGTGTCGAATTGTATAAAATTCAGATATTCTGAGCTGGATATGTTGATTTTTTTTAATACAAATTCAAAAATGAGCTTTTATTTACTA 2194 44.58 MILSEPPKSNTTTKLMHIKEFFGFSHSSSSKSLHSSSSFPISAHRRLPPSSYDPSESAAMEEAIINSEPIITKWDPDSSEFNRITFLFRHGRAESGEFIDSVNSLRQAMDFFISANSTSSVLVIAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSRSSDRSTADGETGGDSITEFDRVSADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYRLGTEKFKISRILKWNWDSLEQIIKNWMNSVNIAVNTLFRGERFLCNHVFSRSERIRESCFSEITKDGAITLLKFPELVAKGKKDSDKIFILMELYEANSDVLPEIEVIFDSVSTSDIKTQAQTSMTKLADSIRDILSEFEITIQKDSSKNPTPGGGIHPLTRSAMSYISSLGDYASTLSDILTVENSPIPSSYLETIAADDALSSPVAAQLGWLILVLLCKLDTKAEMYRDVSLSYLFLANNLNFIVKTAATTNLKTLIGVEWVANHRSKVKVYAANYEATAWNRVMKSLPERGSEEVGSAETAAEGFKSFNAAFEEAYRKQTSWRVEDGNLRDELKMSIAKKVVPIYREFYEGCLEKMNVNVGVVRFSPDDLGNYLSDLFHGVSSSASSSSSSSR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32480822 32483015 - XM_039036869.1 Bhi07g00980 39369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g00980 615 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 611 IPR004140 GO:0000145|GO:0006887
Bhi07g00980 615 Gene3D Exocyst complex component Exo70 71 609 - -
Bhi07g00980 615 MobiDBLite consensus disorder prediction 152 171 - -
Bhi07g00980 615 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 44 611 - -
Bhi07g00980 615 MobiDBLite consensus disorder prediction 152 175 - -
Bhi07g00980 615 SUPERFAMILY Cullin repeat-like 69 601 IPR016159 -
Bhi07g00980 615 Pfam Exo70 exocyst complex subunit 243 598 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g00980 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101221801 1063.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00980 Bhi-Chr7:32480822 Bhi10g00657 Bhi-Chr10:14435507 0 dispersed
Bhi09g00242 Bhi-Chr9:5159378 Bhi07g00980 Bhi-Chr7:32480822 5.09E-39 transposed
Bhi12g01225 Bhi-Chr12:36323426 Bhi07g00980 Bhi-Chr7:32480822 6.25E-79 transposed
Bhi11g02203 Bhi-Chr11:60768926 Bhi07g00980 Bhi-Chr7:32480822 1.88E-178 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g00686 . 12 653 EXO70 exocyst subunit family AT5G03540 75.3 6.3e-280 960.7
Bhi03g01779 . 1 638 EXO70 exocyst subunit family AT5G03540 70.7 4.9e-264 907.9
Bhi03g01779 . 1 638 EXO70 exocyst subunit family AT5G52340 79.3 2.3e-295 1011.9
Bhi07g00686 . 14 653 EXO70 exocyst subunit family AT5G52340 74.1 7.4e-270 927.2
Bhi03g01779 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 2.2e-175 613.2
Bhi07g00686 . 149 653 EXO70 exocyst subunit family AT5G52350 58.7 1.5e-163 573.9
Bhi08g00441 . 1 623 EXO70 exocyst subunit family AT5G58430 67.2 1.3e-247 853.2
Bhi08g00441 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 2.1e-173 606.7
Bhi01g03318 . 60 673 EXO70 exocyst subunit family AT5G13150 52.8 8.4e-176 614.8
Bhi12g01225 . 105 716 EXO70 exocyst subunit family AT5G13990 54.5 3.4e-191 666.0
Bhi01g02900 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.6e-216 750.0
Bhi01g02900 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.5e-209 726.1
Bhi01g02900 . 9 608 EXO70 exocyst subunit family AT3G14090 63.9 5.0e-218 755.0
Bhi08g01486 . 18 657 EXO70 exocyst subunit family AT5G50380 62.2 9.3e-226 780.8
Bhi04g01091 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 2.5e-295 1011.9
Bhi07g00980 . 58 614 EXO70 exocyst subunit family AT3G55150 50.5 3.2e-148 523.1
Bhi07g00980 . 31 613 EXO70 exocyst subunit family AT2G39380 50.6 4.8e-152 535.8
Bhi11g02203 . 27 631 EXO70 exocyst subunit family AT3G09520 54.8 1.7e-178 623.6
Bhi10g00657 CCT 35 608 EXO70 exocyst subunit family AT5G59730 50.4 7.4e-153 538.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g00980 Bhi_Chr07 FPKM 46.978264 48.796036 64.663628 64.784019 23.436657 24.571045 22.131115 115.09491 115.475121 108.31028