Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01106 ATTACCCCTCCCTTTAACAAAAACCCTTCTTCTTCTTCCCTCTCTCCCTAGTCCCTACCTTCAGCAATGGCAGCCATTGCTATCTCCTTCTAAGCTCTAACCCTTCTCTTTTTCCCACTTCTATCCCACAAACAAAACCCATATCCCCATCTTCTTCTTCTTCTTTATGTCAAATTCCGATCATACCACCAACGCCAATGGCGTCTCCAATGGCACCATCGTCGCCATCGACACCCACAAGAATCAGCCCTCTACCAACGGAGCCCTCGTCGTTAAAAAGCCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGTCGTGGCCGCCGTATCCGTATGCCCATCATCTGCGCCGCAAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGATGGCCAAACCATCGAGTGGCTCCTTCGTCAAGCTGAACCTTCCATTATTGCCGCTACTGGCACTGGTACAACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTAAGAGGAAATGGCGGCTCTGTTTCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCCGACGATGACGGTAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTATGGGCAGGTTTGGAGTTTTGCCGCCGCGGCTCCGTCGGAGATGGTGGTTCAACCCGGGGGGATTTCTCAACATTCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCCAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTATCCGGCGGTGGTGGTTCTGGACGGCGGGAAGATGATCCTCGCTAATTGTTGTAATGGGTTGGGGTTATTATTATTGTTCTTCTTCTTCATCGTATTTTGTACAAATATCTGTGTGCCAAATGTCAATTGCTTTCTTGTGTGCAGCTAAGAAAAAAGGGTTAATTCTAGTGGGAATGTAGGATTCTAGGGTTTCAGGTTGCTTGGAATCACAATTCGTAGATCGAATTTCATTTTTCCATGGATGAGTTCGTTCAAATTAGAGCTTTAGGGTTTGAAATTGCTAGAAAAAAAAAGGTTAGGGTTTTCTTTTTTCTTCCGTCTTATGAGAGTGAGAAGAAGATTCTGGTTCATTCCGCAACGATCCATGTCCATAACCCAAAAATCGCTACTGCAAATTGATGATTCATTTCATTTAAACGATGAAATTCTTCGAAATTGCAAGCAGGGGTAGCAGATTTCTTTTGAATCGGAGCTTTGGTTTTTGGCCGGAATCGGCTTTATTTATTGCAGTGGCAGTGGCGGCGCCATTGAAGACCATTCTGAAGCTGATGCTTCTTCTTCTTCAATGGAAGCTCCAATCTCTCTCTGTGTAAGACCTCTGTTTTTTTTTCTTTCCCCCCCTAAAGAATTCCATTTGTATTCTTAGAATTTGTTGGCTTGACAATAATGGTGTTCTTTCATGTTATGTCAGTGGATTGTTTCTGGGGTTTCTCTGATGTGAATAAAAAATCCCATTGTTTTTCTTCCAAAAA 1659 46.53 MSNSDHTTNANGVSNGTIVAIDTHKNQPSTNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSVSSLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQHSSLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34862439 34864097 - XM_039037126.1 Bhi07g01106 39495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01106 261 ProSiteProfiles TCP domain profile. 41 95 IPR017887 -
Bhi07g01106 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bhi07g01106 261 MobiDBLite consensus disorder prediction 23 52 - -
Bhi07g01106 261 MobiDBLite consensus disorder prediction 116 163 - -
Bhi07g01106 261 Pfam TCP family transcription factor 41 126 IPR017887 -
Bhi07g01106 261 MobiDBLite consensus disorder prediction 38 52 - -
Bhi07g01106 261 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 258 - -
Bhi07g01106 261 MobiDBLite consensus disorder prediction 116 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01106 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 393.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01106 Bhi-Chr7:34862439 Bhi12g01178 Bhi-Chr12:34894260 1.31E-105 dispersed
Bhi10g00505 Bhi-Chr10:11466028 Bhi07g01106 Bhi-Chr7:34862439 2.42E-27 dispersed
Bhi07g01106 Bhi-Chr7:34862439 Bhi07g01576 Bhi-Chr7:45137800 1.64E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01178 . 43 260 TCP Transcription Factor Family AT5G23280 64.0 7.9e-66 248.1
Bhi07g01106 . 39 261 TCP Transcription Factor Family AT5G23280 62.4 2.3e-65 246.5
Bhi07g01576 . 57 156 TCP Transcription Factor Family AT3G47620 89.2 8.3e-43 172.6
Bhi08g02014 . 38 138 TCP Transcription Factor Family AT3G47620 82.2 2.5e-39 161.0
Bhi01g02112 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02113 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02114 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi12g02424 . 26 254 TCP Transcription Factor Family AT3G27010 52.4 7.4e-53 205.3
Bhi12g01178 . 31 261 TCP Transcription Factor Family AT5G08330 60.9 1.1e-64 244.2
Bhi07g01106 . 9 259 TCP Transcription Factor Family AT5G08330 56.8 1.4e-64 243.8
Bhi02g00091 CCT 35 136 TCP Transcription Factor Family AT5G60970 73.8 7.0e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1540 PF03634 TCP 1.70E-33 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g01106 Bhi_Chr07 FPKM 14.832842 15.258185 10.765412 11.803496 14.191559 14.057107 12.472812 5.758411 5.177963 4.977546