Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01165 AGAGCTATTTATGATAAAAACCCTAAATTTTCCTGGATCTGAGATTGCTTCGATAGATTTCTGCGTTGATTGCCAATTTGTTCGAAATGGTAATCGAATTCTGGTGAAGTTTTGGCAATTTTTCGCTGTTGATTCTTCGCTTTTCATATTTTTCAATCCATTTGAATGCCTCGAATCTGACGCCATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATAAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTACCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGCACATATGAGATAACTCTACAAAGAGGAGCAAAGACAATGAACTCATTACACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTTGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAACGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGCAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGACGAGGTCGTGGGCGACCTGCACGAACAGCCGAGAGGGACAACTTCCAACCTAACCTTGACGTTGACCCTTGCACATCTATAGAGAACAGGAACAAGAACTCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAACGAAACACCAAAAGAAATAGGTGAAGCCAATCAAGCTATCCAAAACTTTGACCTTAATGCTGATGTCAATGCCAGCGAGGACTCCAAGACTGTAGCAGCAGCAGCAGCAGTGTCAGAAGCGCCTGTCGAACCAGCTGTGCCTGCTACTACCGAGTCCGAGACCAAGGCAGCTGATGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATCGACCCTCTCCAGTATGCACATCTCAGCTCAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAGTAACCTGGTTGACCAACCGGCTAGCCGGCCGGCTGGCCTTAAATGTGCTGAGAAACATCTGTTACTTGAAGCAAGCTACATAGGAAGGAGGTGGTCAGGTCTTAAGTAGGCAAAGAAAATAAGAATCGGAGATTGGAGTTCAATCTGTCATAATGTCCTACCATGTAGTTATCGTTTTCTGATATTTTTTTCTTTTTTAATGTTCTAAGTAAATGATTTCTCGATCTAACATTAGGACCGTAGCTGTTGAAAAGTAATAGCTTGTTCATTATGTAATCCATGTGAAGAGTGTTAACCTTTGGGGAGAGGGTAGGGCTGTACTTTTTTTTTTTTTTTTTTTCTCTCTCTCTTTATTGGGAGCTGAAATATGCATGTCAATTGTCAAACCCTAATTAATTTACTTAAGATAACAGTATTTTAGTTGGGATTCCAA 1466 42.91 MIKTLNFPGSEIASIDFCVDCQFVRNGNRILVKFWQFFAVDSSLFIFFNPFECLESDAMRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQPNLDVDPCTSIENRNKNSNPDVHMEHHVEPNETPKEIGEANQAIQNFDLNADVNASEDSKTVAAAAAVSEAPVEPAVPATTESETKAADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36325218 36329623 + XM_039036034.1 Bhi07g01165 39554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01165 341 Gene3D Histone, subunit A 53 144 IPR009072 GO:0046982
Bhi07g01165 341 Coils Coil 323 341 - -
Bhi07g01165 341 MobiDBLite consensus disorder prediction 148 240 - -
Bhi07g01165 341 PANTHER HISTONE SUPERFAMILY PROTEIN 59 340 - -
Bhi07g01165 341 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 66 129 IPR003958 -
Bhi07g01165 341 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 340 - -
Bhi07g01165 341 MobiDBLite consensus disorder prediction 148 190 - -
Bhi07g01165 341 MobiDBLite consensus disorder prediction 281 306 - -
Bhi07g01165 341 MobiDBLite consensus disorder prediction 217 231 - -
Bhi07g01165 341 SUPERFAMILY Histone-fold 62 147 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01165 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - csv:101209714 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01165 Bhi-Chr7:36325218 Bhi02g00523 Bhi-Chr2:10022921 1.05E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.4e-88 323.6
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi02g02032 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02028 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02029 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02031 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02030 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi05g00797 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00796 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00794 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00795 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi02g00523 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.1e-42 171.0
Bhi02g02032 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02028 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02029 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02031 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02030 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi05g00797 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00796 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00794 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00795 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi02g00523 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.8e-51 199.5
Bhi02g00523 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.7e-38 155.2
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.1e-80 297.4
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi05g00797 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00796 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00794 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00795 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi02g02032 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02028 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02029 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02031 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02030 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g00523 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 6.3e-50 194.9
Bhi07g01165 . 59 340 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.8 4.0e-61 232.6
Bhi04g01469 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.7 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1543 PF00808 CBFD_NFYB_HMF 2.80E-19 CL0012 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g01165 Bhi_Chr07 FPKM 21.378204 24.827354 6.755358 5.029839 2.823765 4.157091 1.105682 3.842929 3.667254 3.072463