Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01273 AAAAACTGTCAAAAAAAAAAAAAAAAAAAAAAACACGTTCTTCTTTCCCTTTTCTTCACTGTCTTCTCTCCTCAGCCACCATTTTATCTCTCTCTTTCAACAAACTCCAAAACCTCTAAAACCACCTCCCCCTTCAATGGAATCTTCCTTCTTCCCCCTCTGAATTCTCAACTCCTCAATCCTCTTCCCCTTGCATGCCATTTCATCTTCTTCCTCTTTCTCTTTCCTCTCTGCAATTCCATCGCCTTTCTCCACTTCCCAAAACCCTAAAACCCTCCCACATTCCCAATGAAGGACCGCACTCCTTCCTCCAATGGCGCTGTTTACGTCCCTCCTCACATCCGTCTCCGCTCCGTCGTTACTCCTTCTAATACTTCCTCTCCTGTTTCCGCTCTTGACTGCAAGCTTAAGGCGGCTCCAGCCTCGCTGCTCGATTCAGGAACTACTGGTCCGCCTTGCCTGCGATCTCAAGAACAGCTTCCAACGGGGAACTCGCGTTTTAATTCCCTGCAGTATGATTCGGCCTACAACGATGCGGCTCCCGTAGAGAGTTGGACTTGTAATTTCGAGTGTTCGCATCAATCGGGTTTTCCACCTTCTGTCAACATTGATTTGTGGAAAAGGAAGTTAGCATTACTTTTACGTGACAAGGAGAAGCAAGAGTTAATTTCAAGGGAGAAAAAAGATAGACAAGACTTTGAGGAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTATTGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTTCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGGGAGAATTTCTCTCTCAAAAGTCTATGTGTAAAGGTTTTCAAGATATCTCCGTCTCTAGATCAAGCAGCAGTGGTAGCATCGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACAAGCATCTAGTAAGGCTGTGATGGATAAAATTCTTTGGAGGAGAAGTTCACATCTGCGTGATCAACAGCAGGCTTGGCAGTCATCACTTGAAGGAAGGGAAATGCTGGAATTTCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATGCATTATTGGCCACAATCTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATAGAATCACTCCGTGGGGTTGTTTGCAACATCATATGTACACAGCCAAGACGAATATCTGCTATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGTTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTTTTTTGCACCACGGGTATCTTGTTGAGAAGATTGTTGGTTGATAGAAATTTGAAAGGCATAACTCATGTTATTGTTGACGAAATTCATGAGCGTGGAATGAACGAAGATTTTCTTCTCATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGGGATTCACACACCCTGTCCGAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTAACTCCATACAATCAAATAGATGATTACGGTCAAGAGAAGACGTGGAAAATGAGCAAACAAGCACCAAGAAAAAGGAAAACCCAGATTGCCTCCACTGTTCAGGATGCACTTATGGCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGGATATGTGAGAGCGAAACACCGGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCATCCTTTATTAGGAGATCCAAGTCGTGTCATGTTGTTGGCATGCCATGGTTCAATGGCCAGTTCAGAGCAGAGGTTGATATTTACTGAACCTGACAAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCTGAGACAAGTATCACGATTAATGATGTTGTGTATGTTCTCGACTGTGGAAAGGCCAAAGAAACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCCTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGTTACCATCTATACCCTAGGTGTGTGTTTGGTTCTTTCTCTGAGTATCAGCTACCAGAAATATTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCTTAAAGCTGGGAAGTATATCTGAGTTTCTATCCAGGGCTTTGCAGTCACCAGAGCTACTTGCGGTTCAGAATGCTATTGAATATTTGAAGATCATTGGAGCATTTGATGAGAGTGAAAATCTAACTGTTTTAGGTCGTTATTTGACTATGCTCCCAATGGAACCTAAACTAGGAAAGATGTTGATAGTAGGTGCTATCTTCAATTGTTTGGATCCAATTTTGACCGTTGTTGCTGGCCTTAGTGTGAGAGACCCTTTTCTAACGCCACTTGAGAAGAAGGATGTTGCAGAGGCTGCAAAATCCCAATTTTCACAAGATCATAGTGACCACCTTGCTATTATCCGGGCTTATGGGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGATATGACTTTTGTTGGAAGAACTTTCTTTCTGTACAATCGATGAAGGCTATTGATTCACTAAGGAAGGAGTTTTTTTCTTTACTTAGAGATACTGGCTTGGTTGATGGGTACTCAGACACCTACAATGCTTGGAGTCTTGATGAACAACTCATACGTGCAGTTATTTGCTATGGCCTCTATCCTGGAGTTTGCTCCGTTGTGCATAATGAGAAGTCGTTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTTCTCTATTCGAACTCAGTCAATGCTCGAGAGTCGAGAATTCCGTATCCATGGATAGTTTTCAACGAGAAGATTAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCTATCTCTGACTCGATGCTGCTTCTCTTTGGAGGAAGCATCTCAAAAGGTGATCATGAGGGACACTTGAAAATGTTGGGTGGTTTTTTGGAATTTTTTATGAAACCTGACGTAGCAGAGACATATCAGAAGTTGAGAATGGAACTTGAAGAGTTTATACAGATGAAGCTACTAAATCCGAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCAGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTCATTTTTGGCCGCCAAATCCTTCAGCATCCTTCCAAGACATCAGCTCCTGCAGCAGCACCAACTGCTGTTTCAAGAATTGAAAGTGGACCTGGTGGTGACAATTCTAAGAGTCAGCTCCAGACTTTACTCACGAGGGCTGGATATGCTGCTCCCATCTATAAGACTAAGCAATTGAAGAATAATCAATTCCGAGCAACCGTGGAATTTAATGGACTGCAAATCATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCTGAGGCTCTTGAGTGGTTGATGGGTGCAAATCAGACGGGGCACGACTATGTCAACCAAATGTCTATGATGCTAAAGAGGAGCAAGAAGGATCATAACTAATCCGGCACTTCCACCTTTTAACGGAAGCATATTTTGAGAACGCAGTAACAGCAGGGCACAATCAATGAAGCTCAGATCTAGAGGAGCAGAGCAGAACTCGGGGTTCATGAAAATACAAGAACATTCAATTCCTAGGCTAGAACTTGGACCATAGGGCTGAGTATGAAAGCACTGGAGTTGAATAATGAGGGGACCAGAGAAGTCATGATAGCAAAGGATGTGGTGAAAGCGATGATGAAACACTGCAAGGTTTGGTTCAGGAAATTATATGTGATTATTTTTGTATATAAATTTATTTAGACCCTAGTCACATACTTGTAAAATATCATTTTTTTGGGTGGGGGGCAAAAAGAATAGTAGGCCTGTAAAATTCCCAAGTGAAATCTTTGATTTCAAATTAAATTATGGTAGCCTGGGTGACAGGTAAACAATGTCTAGTTCTCAAAAACAGCCATGATGTCAGGAAGGGGTGAAAGATGCAACAGTACAGCACAGTCTGCACCTTTCCTGACTCTTCTTTTTAAAGACTCTGGGTCCTCCTTACACAGTCTGTATCTTTCCCTATTCTTCCTTTTTAAGATGTTGGGTCCTTGCATTTCTGTGAAAACAGCAAAGGAGCCCCCAAAGAATGGAAA 4436 42.56 MKDRTPSSNGAVYVPPHIRLRSVVTPSNTSSPVSALDCKLKAAPASLLDSGTTGPPCLRSQEQLPTGNSRFNSLQYDSAYNDAAPVESWTCNFECSHQSGFPPSVNIDLWKRKLALLLRDKEKQELISREKKDRQDFEEIAALASRMGLYCHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLGEFLSQKSMCKGFQDISVSRSSSSGSIATDEGLFEQPEPQASSKAVMDKILWRRSSHLRDQQQAWQSSLEGREMLEFRKNLPAYKEKDALLATISQNQVIIISGETGCGKTTQVPQFILESEIESLRGVVCNIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASTVQDALMAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPSRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDVAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICYGLYPGVCSVVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDHEGHLKMLGGFLEFFMKPDVAETYQKLRMELEEFIQMKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFIFGRQILQHPSKTSAPAAAPTAVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGANQTGHDYVNQMSMMLKRSKKDHN 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39339156 39352256 - XM_039036295.1 Bhi07g01273 39662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01273 1170 SMART ultradead3 274 467 IPR014001 -
Bhi07g01273 1170 Gene3D - 539 692 IPR027417 -
Bhi07g01273 1170 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 714 IPR001650 -
Bhi07g01273 1170 PANTHER ATP-DEPENDENT RNA HELICASE 78 1094 - -
Bhi07g01273 1170 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 78 1094 - -
Bhi07g01273 1170 MobiDBLite consensus disorder prediction 1060 1083 - -
Bhi07g01273 1170 Gene3D - 1065 1149 - -
Bhi07g01273 1170 Pfam Double-stranded RNA binding motif 1082 1144 IPR014720 -
Bhi07g01273 1170 SUPERFAMILY dsRNA-binding domain-like 1077 1159 - -
Bhi07g01273 1170 SMART helicmild6 568 674 IPR001650 -
Bhi07g01273 1170 Pfam DEAD/DEAH box helicase 286 436 IPR011545 GO:0003676|GO:0005524
Bhi07g01273 1170 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 453 IPR014001 -
Bhi07g01273 1170 Pfam Helicase associated domain (HA2) 737 812 IPR007502 GO:0004386
Bhi07g01273 1170 SMART ha2_5 736 826 IPR007502 GO:0004386
Bhi07g01273 1170 SMART DRBM_3 1082 1145 IPR014720 -
Bhi07g01273 1170 Pfam Helicase conserved C-terminal domain 542 673 IPR001650 -
Bhi07g01273 1170 Gene3D - 716 825 - -
Bhi07g01273 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 839 IPR027417 -
Bhi07g01273 1170 CDD DEXHc_RHA-like 292 452 - -
Bhi07g01273 1170 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1081 1146 IPR014720 -
Bhi07g01273 1170 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 892 974 IPR011709 -
Bhi07g01273 1170 CDD SF2_C_RHA 457 682 - -
Bhi07g01273 1170 Gene3D - 231 454 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01273 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 2166.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00111 Bhi-Chr2:2047601 Bhi07g01273 Bhi-Chr7:39339156 0 dispersed
Bhi07g00628 Bhi-Chr7:24855401 Bhi07g01273 Bhi-Chr7:39339156 0 dispersed
Bhi07g01273 Bhi-Chr7:39339156 Bhi11g02370 Bhi-Chr11:64558446 0 dispersed
Bhi11g01207 Bhi-Chr11:35319091 Bhi07g01273 Bhi-Chr7:39339156 1.58E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g01273 Bhi_Chr07 FPKM 23.090277 24.369717 20.025543 20.03883 18.150644 15.576359 18.11676 26.121637 26.001093 25.203058