Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01367 AAAAGAAACAAAGTGATATTAAGAAAAATGGGTTTTGGTCAGTCAATAAATAGTCTTTGATCTTATCTACTAGTAATAAAAAGCTGGGAGGATTATGACGTCATTAACAGGCCACAGATAAATAACCAAAAAACTAAAAATAATAAAATAAAATAAAATTCCACGAATATTCAAACCTTTCTCTCTACAAAACCTCCAATAAAAAAGATTCGATGTTATATGCGACGCCACGACTTCGACCAATCCCTTCTCTCTCTCTAGAATCCTCCATTGATTTTCTCTCTCTACACCTCCATTTTTCTATTATTCATTCTCTTCCTCATCCCACCTTCCCTTATTTATATCTCTATTGTTCTTCGGAGGTTTATTCCTTTTCTTGATTCTACAGATTCCATTATTCGCCTTTCCAGTTCTTTCTCATTGGCTTGCTTCGGATTTTTCTATGTCCCATTTTCATCCAACCCACCGACTTCTTCCTTAAATATACCCCTTTTCTCTGTTTCAATTTTACAAAATTAATCTGGGTTTCTTCTGTTATTTGCGATGGATTTCATTGATAATTTTCTGGATATTCGAGTGGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGAAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCAATTGATTCTTGCCGACAGCAGTTATCTGGGGTGTCGACAGAGAGCTCTGAGCATACCTCAAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAACAAAACTTCTGTGAATTCCCATTTTGAAATTGAAGATGAAGAACAATCAAAACCAGAGAGAAAGGAATTGGGTCGATTGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAATCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCGTCGGTTGTTGAGGTCAAACAGAATGGCGGTGGTGGTGCTTTTCAACCATTTCAAAAGGAGAAAACAACTCCATTGAAAACAGAATCGGCAGTGGTCGTTGGTAAAACGGCCGGTTCTTCTCCGATTCCAGAGGCGACGACAAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGCGGAACCAGTAAAAGAGAAGATAAGGAATCTCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCATGTTGCTACACCAAAACAGATCAGAGAGTTAATGAAGGTCGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGACCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCACAGCAATTCGTGGTGGTCGGAAGCATATGGGTTCCGCCACCACCCCCACCGAAATACACGGTGGCAACGACAGGGAAAGCTAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTACGACGGCAAACGACGGCAGAGGAAGGGAAGGCGAGTCATAGCGGGGGAGTGGTTCAGTCAAATTCGCCGGCGACGTCGTCCTGCACCCATCCCACCACAACCTCGCCGTCGGCGGTGTAGTTTTTTTTTTTTTTTTTTTTAATTTTTGTTAAATGTTTGAGAAAAAGTTTTGTAACTAAAAATCAATATTCATAAAGCCATGTGATGTACATAAGATTTTCACGTGAAGTTCTTACTCATTTTTTGGATTTCCGG 1755 43.08 MDFIDNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDGPVLEEFIPINKTSVNSHFEIEDEEQSKPERKELGRLDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKQNGGGGAFQPFQKEKTTPLKTESAVVVGKTAGSSPIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATTGKARNGIYAPVATAVRRQTTAEEGKASHSGGVVQSNSPATSSCTHPTTTSPSAV 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41194092 41196218 - XM_039035972.1 Bhi07g01367 39756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01367 358 MobiDBLite consensus disorder prediction 113 212 - -
Bhi07g01367 358 MobiDBLite consensus disorder prediction 321 358 - -
Bhi07g01367 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 264 IPR017930 -
Bhi07g01367 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677
Bhi07g01367 358 MobiDBLite consensus disorder prediction 192 212 - -
Bhi07g01367 358 PANTHER TRANSCRIPTION FACTOR HHO2 15 352 - -
Bhi07g01367 358 MobiDBLite consensus disorder prediction 333 358 - -
Bhi07g01367 358 MobiDBLite consensus disorder prediction 173 190 - -
Bhi07g01367 358 Coils Coil 16 36 - -
Bhi07g01367 358 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Bhi07g01367 358 Gene3D - 206 263 - -
Bhi07g01367 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 352 IPR044787 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01367 - - - csv:101203539 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01984 Bhi-Chr4:51039514 Bhi07g01367 Bhi-Chr7:41194092 5.71E-112 dispersed
Bhi05g01152 Bhi-Chr5:41127863 Bhi07g01367 Bhi-Chr7:41194092 1.40E-43 dispersed
Bhi06g01952 Bhi-Chr6:54022001 Bhi07g01367 Bhi-Chr7:41194092 5.12E-56 dispersed
Bhi07g01367 Bhi-Chr7:41194092 Bhi02g00898 Bhi-Chr2:19158108 1.18E-15 dispersed
Bhi07g01367 Bhi-Chr7:41194092 Bhi10g02074 Bhi-Chr10:52035161 1.34E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi09g02029 CCT 1 177 G2-like Transcription Factor Family AT5G42630 60.4 9.3e-42 167.9
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT1G25550 54.3 7.2e-52 201.8
Bhi07g01367 . 19 257 G2-like Transcription Factor Family AT1G25550 55.4 4.7e-51 199.1
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT3G25790 51.4 1.7e-42 170.6
Bhi08g00576 CCT 1 245 G2-like Transcription Factor Family AT3G46640 52.8 1.6e-58 224.2
Bhi11g02825 . 5 185 G2-like Transcription Factor Family AT3G46640 51.3 7.7e-37 152.1
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT5G05090 56.7 2.6e-75 279.6
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT5G05090 53.0 1.2e-67 254.2
Bhi01g00234 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.6e-65 246.1
Bhi01g00235 . 12 310 G2-like Transcription Factor Family AT4G13640 54.9 2.3e-56 216.9
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi06g00890 . 1 229 G2-like Transcription Factor Family AT1G69580 55.9 1.8e-49 194.1
Bhi06g00889 . 1 223 G2-like Transcription Factor Family AT1G69580 56.7 3.1e-49 193.4
Bhi05g01980 . 1 382 G2-like Transcription Factor Family AT1G79430 54.5 1.6e-88 323.9
Bhi05g01982 . 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi05g01981 CCT 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi10g00928 CCT 1 364 G2-like Transcription Factor Family AT1G79430 52.2 5.1e-74 275.8
Bhi01g00234 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 5.3e-39 159.5
Bhi01g00235 . 39 198 G2-like Transcription Factor Family AT1G79430 61.2 2.9e-37 153.7
Bhi03g00736 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g00737 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 1.2e-90 330.9
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT3G10760 57.8 1.2e-80 297.7
Bhi03g02516 . 1 203 G2-like Transcription Factor Family AT2G40970 61.1 1.5e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1565 None None None None Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi07g01367 Bhi_Chr07 FPKM 57.452595 60.655624 73.135796 78.892723 39.673706 36.408493 40.857578 110.340385 111.447876 114.811478