Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01422 CGCATGAGGATATTGTTGCTAACGTGCAGTCATATTATTGTCCTTAAAAATTGAAAATTCTCTTATCGTCGTCTCTCCCAAACATTTTCGTTATCTTCTTCTCTCTGAGAATCTTTCCTTTCTCTCTCGCGGGGTTTTGCATCAACCACACACAATGCAAGCTGACAGTCTAAGAATACATAAGCTTGCTGTTCTGCATCCAGTGAGACCTTTCATTACAGATTCTTTCCCGCGCTCAAAGCTCTTCTCTTCTTTCGCTCTTATTCCCAAAGGTTCCCGCCAACCAGCTTCCTTCCGCTTGCCTCAGAATTCCTGCTTCAAGTGTGTGCGGTATGACAGTCCAGTAATGGGTGCAACGGAATTATCTGATCTTGAAGATGTGGAGTTTTTGGTGGAGATGTGCATTACGCATACACTACCACCGGCTCTGACGCTTAAGCAGGGGCTGGAGAGTATAAGTGAGGCCATTGAAAAGTTGAAATTAGAACCTCCACGTTCTTCCCACGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTACAAGAGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCATCTGAAGTGTATCCTATCTTTTTCCTTTCCAATGAGAAGGACGCCACCATTAAGTCTCTATACTTGAATGATACTCGCGGTGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAACTTGTCTTCTACTTCATCAAAACGAAGTACATTGAAAAGGTATCTCATGAATGATTCAGCTCCTATTATGGCTTATGGTTTTGTTAACGATAATACCGGGGAGATATCTTCATTGAAGAACGAGGCTGGTCATTCATGCTTTTGCATTCCCCAAATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCTTGGAGTGAATCTTTTCCTTGTACATTTGAGGAAGCTATCCATTCTTTGGGCTCATCTATCTACCAGATCAGTACTAATTTTCCATCTAAAGGAAACTGCCAGTACAAATATATAAGATCTTCATTAACAGCTTCAAAACTTGTGGACAGAACAAATCAGATGGCATACATGAAAGTGCTTTCTGTAGCTGGTGAAAGTTTCAGGACTGGCATCATGGAAATGGAGTCTGCACTCTCCCATCAATTCTGCATTAGGGTTTCACCAAACGTTGCCGTTGCATGTAATATGTTGGATCATATCAACGAAAATGTTCACTCAGAGCAAGAGCATGCCAACATTAATGCTGTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCGTCGCTGCTGCAAGTCATCCCCTGATAACATGTATCGCATGCTTTGATGAACGCTCTCTTGCTTTTCATGCGATTGGATATGCCAAAGGATCTCATAGCCCAGCAGTCGTAATCACATCGTCAGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCCAGTCAAGATTTTCTTCCTCTTTTATTGCTCACAGCTGATCGTCCCCTGGAGCTACAGGATGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCTCCAACTGATCAAATTCCCGCTAGAATGGTACTTACCACTCTTGATTCTGCCGTACATTGGGCAACCTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACCGAAGTTTTTACAAAATATATTCGACTTGAAGCGTCTCCAACGTCTATTGATACTTTTGGTCATATGGCAGAGGTTTTGAAAGTAATCCATGGAGCCAAAAATGGAATTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAGCATATTTCATGGCCTATAGTGGCTGATGTATTATCTGGTTTACGATTAAGAAAGAGTTTGACTTCTTTCCTAGAAATGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCATTGCTTTCTGATTTGGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGCATTTCGAAGATGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGTATCCAGGTCGTCACGATCCATCACATATTGTAACCCATAGAATCCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGGTTTTCCTCTCAGTAGGAGCAAGTGGACTACTACTTTACGAGCATTGAACATGATGGTTGAGTGGGAAATACAATTTCAAATTTCTGCTAACTACTCTCTGTCTGAGCCACAAGTTGCTCAGGTAATCTCAGAAGCACTTCCATGTGATTCTGTTCTGTTCCTGGGGAACAGCATGCCAATCCGTGATGTAGATATGTATGCATATGGTTGGTCAAAATGCAACGACAGTGTAGCGGCTAGACAATTAAACTTACAACTTCCATTTTGCTGGACATGGACTTCTGGGAATAGAGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTCGGATGCAACAAACGAGTGCTTTGTCTAGTTGGAGACATTTCTTTCCTGCATGATACAAATGGCTTAGCAATTTTGAACCAGAGGATGGCGAGGAAACCTGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGAGGCAGCAATACTAGACCAATTCTTCCACACCTCTCACAAGGTTTCACTCCGAAGCCTATGTATGGCACATGGCTTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATTTCAGTCTCATCATGAAGAAAATGACTGCATAATTGAGGTCGACAGTTCCATTGATGCCAATACTACCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGATCATGGTTTACGCATATTTTCAGGACTTCATTCTGAAGAATCTGTTTCATCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCACTATGTGCTCCACCTACAACTGCATCTAGTTCTATTGATCAAGTCAGTCGGAAGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTATCTGGAGGATGGGAGTCTTGGCCTTGGTGAGATTTCACCCCTTGACATCCACAGAGAGAGCCTACTAGATGTGGAAGAGCAACTTAAGTGTCTCATTCATATATTAAAGGGAGCGAAGATCAGGAGCTCCATTCCTCTGCTACGGGGTTCATTTTCTTCTTGGATTTTCCATGAACTGGGAATACCACCAAGTTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCTGTTCTCAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTAGATGTACTCCAGCATCAGTTAGATGAAGAAAAGAACTTGGCAACTTCGTCAAAAGTTCAAATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTTGCTCATGTTGCTAAGACACTGGCCGAAGAAGGATTTCCCACTATCAAGTTAAAGGTAGCCAGACAAGGGAATGTAATGTATGATGCTGCAGTTGTACAGGAAATAAGGAAGAAGCTTGGCAACCAAATTGAACTCCGTGTTGATGCTAATCGGAACTGGAGCTATGAAGAAGCTATTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTGCAATATATTGAGGAACCAGTTATGGATGAAGATGCTATTATTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTCTCGATCATATTCAAGATAATCCTGTGAAAGAACTTGCGAAGTATGCCCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGGGGATTTGAAAATGCAGCATTGGTAGCAAGGTGGGCACAGCAACACGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATATATACACTTATCCTGTTATCTGGAGCTTCAGAATGCAGAAGTAAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCTCATGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTCTTGATCCTCTCAGAATTAGCCGTGACCCTCATAGTGGCATTGTTGAAGCATCTGTTGCTGAGGCTAATCGTCTTCTAAAAGGTTTTCAAATCAACCAGAAGTTTGTTTGTAAAAAATTTACTGAAGAGCAAGTATGTAGGTACAAATTAAGTGTAGACTCAAAGGGGTTCTCTTATTCAACAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTACAATCATGAAAGGCATCTCAGGTTCAGCCAGATGCATTTCTCTTGACCTTCCTGGTCATGGGGAATCAACAACACAAAAGAATGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTATTCAATTGAGGTTATTGCTGATCTACTGTACAAGTTGATTCATCATCTTGCTCCTGGTAAAGGTATAGTTAACCTTGTAGGATATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGGTGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGGAGAATCCGTAGAGTTAAAGATGACTCTAGAGCACGAATCCTTAAGGTCTATGGCTTACAAAGATTTCTTGAGGCGTGGTATTGTGGAGAACTATGGAAAAGCAGTCTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCATGATGACGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATCGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATGCTGCAAAATACCTCTTTCAATCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGCAAATTCTCTCTCAAATTGATATGGGCAAGAAGATCAAAGATGAACCAGTTGTTGACCTCCACGAAATAGTTGAGATCCCGGACTCGGGACATGCTGCCCATCTGGAGAATCCTCTTGATGTTATCAATGCATTGAGTAGATTTCTAATAAGGAGTAGAACACGGTGCTCTTACAATCCGGATTTCGCTGGTAGAGGCTAAGTTGAAATTACGCATGAGAGCCACCTTCTGTAAGGGCACCGCTGCCTGTGTTCGGCATCAAATAAGAGAGTAGGGATTCAGATTCTACAAATTAGGTGGTTCCTCAAGTCCTGGACACGTCATATGCCAAAATGTATAGATTTTTAGCGTTTTATCATCACAGCCTCGTAGGCAATTATATGGGTCAGTCATATACAAATTTCTTTTGATTGCCTATAAGTATTGATTGCTTTTCTGTTATTTTACTAAGGGAATGATCTCTCTGAACTGCCTTGAAAATCTTGTATGTTACTGTGAACTGATTTTACAAAGGAATTTGATGTACACCTAAGAGATGAACA 5673 41.44 MQADSLRIHKLAVLHPVRPFITDSFPRSKLFSSFALIPKGSRQPASFRLPQNSCFKCVRYDSPVMGATELSDLEDVEFLVEMCITHTLPPALTLKQGLESISEAIEKLKLEPPRSSHGVFRFQVAVPPSTRALLWFCCQPESSEVYPIFFLSNEKDATIKSLYLNDTRGVFGIGTAIYFANLSSTSSKRSTLKRYLMNDSAPIMAYGFVNDNTGEISSLKNEAGHSCFCIPQIELSEYEGISVLSATLAWSESFPCTFEEAIHSLGSSIYQISTNFPSKGNCQYKYIRSSLTASKLVDRTNQMAYMKVLSVAGESFRTGIMEMESALSHQFCIRVSPNVAVACNMLDHINENVHSEQEHANINAVWASLIVEECSRLGLTYFCIAPGSRSSPLAVAAASHPLITCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPLELQDAGANQAINQVNHFGSFVRFFFSLPAPTDQIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYIRLEASPTSIDTFGHMAEVLKVIHGAKNGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLTSFLEMENNFFFVDHLDHALLSDLVRKWLKFDVIIQIGSRVTSKRISKMLEDCSPCSYIMVDKYPGRHDPSHIVTHRIQSTVLEFVGCLLKAGFPLSRSKWTTTLRALNMMVEWEIQFQISANYSLSEPQVAQVISEALPCDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAARQLNLQLPFCWTWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCLVGDISFLHDTNGLAILNQRMARKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKVSLRSLCMAHGLKHLHVRTKMELQDALFQSHHEENDCIIEVDSSIDANTTFHSVLRKFTCQAVDHGLRIFSGLHSEESVSSGLFLCKISRMECTLFRIPLCAPPTTASSSIDQVSRKFFREGFILSLYLEDGSLGLGEISPLDIHRESLLDVEEQLKCLIHILKGAKIRSSIPLLRGSFSSWIFHELGIPPSSIYPSVRCGLEMAVLNAIAGRKGCSLLDVLQHQLDEEKNLATSSKVQICGLLDSGGTPSEVAHVAKTLAEEGFPTIKLKVARQGNVMYDAAVVQEIRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETLDHIQDNPVKELAKYAHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLELQNAEVRKLMNIQPAPSIAHGLGTYRWLEEDVTLDPLRISRDPHSGIVEASVAEANRLLKGFQINQKFVCKKFTEEQVCRYKLSVDSKGFSYSTKVLEVGQRTNDNVLFFLHGFLGTGEDWITIMKGISGSARCISLDLPGHGESTTQKNDCDVHGVEEPSYSIEVIADLLYKLIHHLAPGKGIVNLVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKMARRIRRVKDDSRARILKVYGLQRFLEAWYCGELWKSSLREHPHYSQIIASRLKHDDVQHLAKALSDLSIGRQPQLWDELKCCKIPLSIIVGEKDTKFKTIAQQILSQIDMGKKIKDEPVVDLHEIVEIPDSGHAAHLENPLDVINALSRFLIRSRTRCSYNPDFAGRG 1725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42308213 42326523 + XM_039037448.1 Bhi07g01422 39811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01422 1725 Pfam Enolase C-terminal domain-like 1163 1348 IPR029065 -
Bhi07g01422 1725 SUPERFAMILY DHS-like NAD/FAD-binding domain 522 739 IPR029035 -
Bhi07g01422 1725 SUPERFAMILY Enolase N-terminal domain-like 995 1130 IPR029017 -
Bhi07g01422 1725 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1206 1237 IPR018110 GO:0009063
Bhi07g01422 1725 CDD TPP_SHCHC_synthase 757 949 - -
Bhi07g01422 1725 SFLD o-succinylbenzoate synthase 1027 1373 - -
Bhi07g01422 1725 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 360 967 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bhi07g01422 1725 Pfam alpha/beta hydrolase fold 1439 1550 IPR000073 -
Bhi07g01422 1725 SFLD muconate cycloisomerase 1027 1373 - -
Bhi07g01422 1725 TIGRFAM menC_gamma/gm+: o-succinylbenzoate synthase 1028 1339 - -
Bhi07g01422 1725 SMART MR_MLE_2 1158 1254 IPR013342 -
Bhi07g01422 1725 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 366 837 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bhi07g01422 1725 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 368 536 IPR012001 GO:0030976
Bhi07g01422 1725 SUPERFAMILY alpha/beta-Hydrolases 1430 1708 IPR029058 -
Bhi07g01422 1725 Gene3D - 358 554 - -
Bhi07g01422 1725 Gene3D - 1134 1378 IPR036849 -
Bhi07g01422 1725 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 820 942 IPR011766 GO:0003824|GO:0030976
Bhi07g01422 1725 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 360 540 IPR029061 -
Bhi07g01422 1725 Pfam Middle domain of thiamine pyrophosphate 547 778 IPR032264 -
Bhi07g01422 1725 Gene3D alpha/beta hydrolase 1428 1709 IPR029058 -
Bhi07g01422 1725 Gene3D - 995 1133 IPR029017 -
Bhi07g01422 1725 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 170 1710 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bhi07g01422 1725 SUPERFAMILY Enolase C-terminal domain-like 1154 1374 IPR036849 -
Bhi07g01422 1725 Gene3D - 756 976 - -
Bhi07g01422 1725 Gene3D - 573 749 - -
Bhi07g01422 1725 CDD TPP_PYR_MenD 368 529 - -
Bhi07g01422 1725 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 756 949 IPR029061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01422 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 3113.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02477 Bhi-Chr4:67152132 Bhi07g01422 Bhi-Chr7:42308213 1.93E-08 dispersed
Bhi07g01422 Bhi-Chr7:42308213 Bhi07g01424 Bhi-Chr7:42308214 0 dispersed
Bhi07g01421 Bhi-Chr7:42308208 Bhi07g01422 Bhi-Chr7:42308213 0 tandem
Bhi07g01422 Bhi-Chr7:42308213 Bhi07g01423 Bhi-Chr7:42308214 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1018 . . . . . . . . Cmo04g01637 . . . . . Sed06g1824 . . Bhi07g01422 Tan04g0939 Cmetu10g0984 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37