Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01426 TCTTTTTCCTTTCCAATGAGAAGGACGCCACCATTAAGTCTCTATACTTGAATGATACTCGCGGTGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAACTTGTCTTCTACTTCATCAAAACGAAGTACATTGAAAAGATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCTTGGAGTGAATCTTTTCCTTGTACATTTGAGGAAGCTATCCATTCTTTGGGCTCATCTATCTACCAGATCAGTACTAATTTTCCATCTAAAGGAAACTGCCAGTACAAATATATAAGATCTTCATTAACAGCTTCAAAACTTGTGGACAGAACAAATCAGATGGCATACATGAAAGTGCTTTCTGTAGCTGGTGAAAGTTTCAGGACTGGCATCATGGAAATGGAGTCTGCACTCTCCCATCAATTCTGCATTAGGGTTTCACCAAACGTTGCCGTTGCATGTAATATGTTGGATCATATCAACGAAAATGTTCACTCAGAGCAAGAGCATGCCAACATTAATGCTGTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCGTCGCTGCTGCAAGTCATCCCCTGATAACATGTATCGCATGCTTTGATGAACGCTCTCTTGCTTTTCATGCGATTGGATATGCCAAAGGATCTCATAGCCCAGCAGTCGTAATCACATCGTCAGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCCAGTCAAGATTTTCTTCCTCTTTTATTGCTCACAGCTGATCGTCCCCTGGAGCTACAGGATGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCTCCAACTGATCAAATTCCCGCTAGAATGGTACTTACCACTCTTGATTCTGCCGTACATTGGGCAACCTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACCGAAGTTTTTACAAAATATATTCGACTTGAAGCGTCTCCAACGTCTATTGATACTTTTGGTCATATGGCAGAGGTTTTGAAAGTAATCCATGGAGCCAAAAATGGAATTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAGCATATTTCATGGCCTATAGTGGCTGATGTATTATCTGGTTTACGATTAAGAAAGAGTTTGACTTCTTTCCTAGAAATGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCATTGCTTTCTGATTTGGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGCATTTCGAAGATGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGTATCCAGGTCGTCACGATCCATCACATATTGTAACCCATAGAATCCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGGTTTTCCTCTCAGTAGGAGCAAGTGGACTACTACTTTACGAGCATTGAACATGATGGTTGAGTGGGAAATACAATTTCAAATTTCTGCTAACTACTCTCTGTCTGAGCCACAAGTTGCTCAGGTAATCTCAGAAGCACTTCCATGTGATTCTGTTCTGTTCCTGGGGAACAGCATGCCAATCCGTGATGTAGATATGTATGCATATGGTTGGTCAAAATGCAACGACAGTGTAGCGGCTAGACAATTAAACTTACAACTTCCATTTTGCTGGACATGGACTTCTGGGAATAGAGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTCGGATGCAACAAACGAGTGCTTTGTCTAGTTGGAGACATTTCTTTCCTGCATGATACAAATGGCTTAGCAATTTTGAACCAGAGGATGGCGAGGAAACCTGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGAGGCAGCAATACTAGACCAATTCTTCCACACCTCTCACAAGGTTTCACTCCGAAGCCTATGTATGGCACATGGCTTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATTTCAGTCTCATCATGAAGAAAATGACTGCATAATTGAGGTCGACAGTTCCATTGATGCCAATACTACCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGATCATGGTTTACGCATATTTTCAGGACTTCATTCTGAAGAATCTGTTTCATCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCACTATGTGCTCCACCTACAACTGCATCTAGTTCTATTGATCAAGTCAGTCGGAAGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTATCTGGAGGATGGGAGTCTTGGCCTTGGTGAGATTTCACCCCTTGACATCCACAGAGAGAGCCTACTAGATGTGGAAGAGCAACTTAAGTGTCTCATTCATATATTAAAGGGAGCGAAGATCAGGAGCTCCATTCCTCTGCTACGGGGTTCATTTTCTTCTTGGATTTTCCATGAACTGGGAATACCACCAAGTTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCTGTTCTCAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTAGATGTACTCCAGCATCAGTTAGATGAAGAAAAGAACTTGGCAACTTCGTCAAAAGTTCAAATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTTGCTCATGTTGCTAAGACACTGGCCGAAGAAGGATTTCCCACTATCAAGTTAAAGGTAGCCAGACAAGGGAATGTAATGTATGATGCTGCAGTTGTACAGGAAATAAGGAAGAAGCTTGGCAACCAAATTGAACTCCGTGTTGATGCTAATCGGAACTGGAGCTATGAAGAAGCTATTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTGCAATATATTGAGGAACCAGTTATGGATGAAGATGCTATTATTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTCTCGATCATATTCAAGATAATCCTGTGAAAGAACTTGCGAAGTATGCCCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGGGGATTTGAAAATGCAGCATTGGTAGCAAGGTGGGCACAGCAACACGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATATATACACTTATCCTGTTATCTGGAGCTTCAGAATGCAGAAGTAAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCTCATGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTCTTGATCCTCTCAGAATTAGCCGTGACCCTCATAGTGGCATTGTTGAAGCATCTGTTGCTGAGGCTAATCGTCTTCTAAAAGGTTTTCAAATCAACCAGAAGTTTGTTTGTAAAAAATTTACTGAAGAGCAAGTATGTAGGTACAAATTAAGTGTAGACTCAAAGGGGTTCTCTTATTCAACAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTACAATCATGAAAGGCATCTCAGGTTCAGCCAGATGCATTTCTCTTGACCTTCCTGGTCATGGGGAATCAACAACACAAAAGAATGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTATTCAATTGAGGTTATTGCTGATCTACTGTACAAGTTGATTCATCATCTTGCTCCTGGTAAAGGTATAGTTAACCTTGTAGGATATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGGTGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGGAGAATCCGTAGAGTTAAAGATGACTCTAGAGCACGAATCCTTAAGGTCTATGGCTTACAAAGATTTCTTGAGGCGTGGTATTGTGGAGAACTATGGAAAAGCAGTCTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCATGATGACGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATCGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATGCTGCAAAATACCTCTTTCAATCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGCAAATTCTCTCTCAAATTGATATGGGCAAGAAGATCAAAGATGAACCAGTTGTTGACCTCCACGAAATAGTTGAGATCCCGGACTCGGGACATGCTGCCCATCTGGAGAATCCTCTTGATGTTATCAATGCATTGAGTAGATTTCTAATAAGGAGTAGAACACGGTGCTCTTACAATCCGGATTTCGCTGGTAGAGGCTAAGTTGAAATTACGCATGAGAGCCACCTTCTGTAAGGGCACCGCTGCCTGTGTTCGGCATCAAATAAGAGAGTAGGGATTCAGATTCTACAAATTAGGTGGTTCCTCAAGTCCTGGACACGTCATATGCCAAAATGTATAGATTTTTAGCGTTTTATCATCACAGCCTCGTAGGCAATTATATGGGTCAGTCATATACAAATTTCTTTTGATTGCCTATAAGTATTGATTGCTTTTCTGTTATTTTACTAAGGGAATGATCTCTCTGAACTGCCTTGAAAATCTTGTATGTTACTGTGAACTGATTTTACAAAGGAATTTGATGTACACCTAAGAGATGAACA 4962 41.03 MAYMKVLSVAGESFRTGIMEMESALSHQFCIRVSPNVAVACNMLDHINENVHSEQEHANINAVWASLIVEECSRLGLTYFCIAPGSRSSPLAVAAASHPLITCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPLELQDAGANQAINQVNHFGSFVRFFFSLPAPTDQIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYIRLEASPTSIDTFGHMAEVLKVIHGAKNGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLTSFLEMENNFFFVDHLDHALLSDLVRKWLKFDVIIQIGSRVTSKRISKMLEDCSPCSYIMVDKYPGRHDPSHIVTHRIQSTVLEFVGCLLKAGFPLSRSKWTTTLRALNMMVEWEIQFQISANYSLSEPQVAQVISEALPCDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAARQLNLQLPFCWTWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCLVGDISFLHDTNGLAILNQRMARKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKVSLRSLCMAHGLKHLHVRTKMELQDALFQSHHEENDCIIEVDSSIDANTTFHSVLRKFTCQAVDHGLRIFSGLHSEESVSSGLFLCKISRMECTLFRIPLCAPPTTASSSIDQVSRKFFREGFILSLYLEDGSLGLGEISPLDIHRESLLDVEEQLKCLIHILKGAKIRSSIPLLRGSFSSWIFHELGIPPSSIYPSVRCGLEMAVLNAIAGRKGCSLLDVLQHQLDEEKNLATSSKVQICGLLDSGGTPSEVAHVAKTLAEEGFPTIKLKVARQGNVMYDAAVVQEIRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETLDHIQDNPVKELAKYAHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLELQNAEVRKLMNIQPAPSIAHGLGTYRWLEEDVTLDPLRISRDPHSGIVEASVAEANRLLKGFQINQKFVCKKFTEEQVCRYKLSVDSKGFSYSTKVLEVGQRTNDNVLFFLHGFLGTGEDWITIMKGISGSARCISLDLPGHGESTTQKNDCDVHGVEEPSYSIEVIADLLYKLIHHLAPGKGIVNLVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKMARRIRRVKDDSRARILKVYGLQRFLEAWYCGELWKSSLREHPHYSQIIASRLKHDDVQHLAKALSDLSIGRQPQLWDELKCCKIPLSIIVGEKDTKFKTIAQQILSQIDMGKKIKDEPVVDLHEIVEIPDSGHAAHLENPLDVINALSRFLIRSRTRCSYNPDFAGRG 1423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42309052 42326523 + XM_039037453.1 Bhi07g01426 39815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01426 1423 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 64 535 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bhi07g01426 1423 SFLD o-succinylbenzoate synthase 725 1071 - -
Bhi07g01426 1423 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 66 234 IPR012001 GO:0030976
Bhi07g01426 1423 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 904 935 IPR018110 GO:0009063
Bhi07g01426 1423 Gene3D - 454 674 - -
Bhi07g01426 1423 SUPERFAMILY Enolase N-terminal domain-like 693 828 IPR029017 -
Bhi07g01426 1423 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 454 647 IPR029061 -
Bhi07g01426 1423 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 518 640 IPR011766 GO:0003824|GO:0030976
Bhi07g01426 1423 CDD TPP_SHCHC_synthase 455 647 - -
Bhi07g01426 1423 Pfam Middle domain of thiamine pyrophosphate 245 476 IPR032264 -
Bhi07g01426 1423 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 58 238 IPR029061 -
Bhi07g01426 1423 Gene3D alpha/beta hydrolase 1126 1407 IPR029058 -
Bhi07g01426 1423 SUPERFAMILY alpha/beta-Hydrolases 1128 1406 IPR029058 -
Bhi07g01426 1423 Pfam alpha/beta hydrolase fold 1137 1248 IPR000073 -
Bhi07g01426 1423 Gene3D - 271 447 - -
Bhi07g01426 1423 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 22 1408 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bhi07g01426 1423 SUPERFAMILY Enolase C-terminal domain-like 852 1072 IPR036849 -
Bhi07g01426 1423 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 58 665 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bhi07g01426 1423 SFLD muconate cycloisomerase 725 1071 - -
Bhi07g01426 1423 SMART MR_MLE_2 856 952 IPR013342 -
Bhi07g01426 1423 TIGRFAM menC_gamma/gm+: o-succinylbenzoate synthase 726 1037 - -
Bhi07g01426 1423 SUPERFAMILY DHS-like NAD/FAD-binding domain 220 437 IPR029035 -
Bhi07g01426 1423 CDD TPP_PYR_MenD 66 227 - -
Bhi07g01426 1423 Pfam Enolase C-terminal domain-like 861 1046 IPR029065 -
Bhi07g01426 1423 Gene3D - 56 252 - -
Bhi07g01426 1423 Gene3D - 693 831 IPR029017 -
Bhi07g01426 1423 Gene3D - 832 1076 IPR036849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01426 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 2589.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01424 Bhi-Chr7:42308214 Bhi07g01426 Bhi-Chr7:42309052 0 dispersed
Bhi07g01426 Bhi-Chr7:42309052 Bhi02g00519 Bhi-Chr2:9961329 4.35E-08 dispersed
Bhi07g01425 Bhi-Chr7:42308397 Bhi07g01426 Bhi-Chr7:42309052 0 tandem
Bhi07g01426 Bhi-Chr7:42309052 Bhi07g01427 Bhi-Chr7:42311708 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1015 . . . . . . . . Cmo04g01639 . . . . . . . . Bhi07g01426 . . . . . . . . . . . . . . . . . . Csa05g02543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37