Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01433 ACTTTAGGCTGGATTCTATAAAATGACCCGACGAATTCGTTTGGGTCCGGCCAGGCCATCAAGACTTCGATACATGGGCGTATGAAGCCTGGATCGCAAGAAACTGTATACAGAATTGAACTGGGCCTGGAGACGGATCGAGAGACCTAATGGGGTAGAGAATCCGAAGTAATTCGGATCATTCTTTTCCGGGTTGGGGAACCGATTGTATAAACGCGACGCTCGTTCCCTTCCCGCCAAGTAGTTTCTTGAAGAAGAATATGTCTTCTTCATCAAATTACTACACTGCTGCGCTTAAGTTTTGCTGCGAAGCTCGGAATCGAGCCCAAGTTAAGAAGCTTCATTGCCGCATTATCAGAACTGTACCAAACATAGAAACCTTTCTGTATAATAACCTCATTAATACTTACGTGAAACTTGGGGACTTGAAGAATGCACGGAACGTGTTTGCTCAAATTCCTCAACCAAACCTTTTTTCATGGAACACGCTGCTTTCAGCCTACTCAAAATTGGGTCACCTTCGCGATATGAAAGAGGTCTTCGACCGCATGCCGGAGCACGATGTGGTCTCTTGGAACTCGCTTCTCTCCGGGTATGCGGGTAACAATTTGATTTCCGAATCGGTTAGAGTTTATAACATGATGTTAAAGGATGGGTCGGTTAACTTGAATAGGATTACATTCTCTACTATGTTAATACTCTCGTCTAATCGAGGATTTGTTGATTTGGGTCGGCAGATTCATGGGCAAATCTTCAAATTTGGTTATCAATCTTATCTGTTTGTTGGCAGTCCTTTGGTAGATATGTATGCAAAAACGGGATTTATCAATGATGCGAGGCGGATTTTTAAAGAGATACCTGAGAAAAATATAGTTGTGTACAATACTATGATCACGGGTCTTTTGCGGTGTGGATTTATTGTAGAAGCCGAGCAATTGTTTGATAATATGCCAGAAAAAGATTCGATTTCATGGACAACAATCATAACTGGACTTACCCAAAATGGTTTGTTTAAAGAAGCAGTTGATAAGTTCAAAGAAATGGGAAGAGAAAGCTTGTGCATGGATCAGTTCACCTTTGGGAGTGTGTTGACTGCATGTGGCGGTCTTCTGGCACTTGATGTGGGAAAGCAAATTCACGCCTACATTGTCAGAACTGATTATCAAGATAACATCTTCGTTGGAAGTGCTCTACTTGATATGTACTGCAAGTGTCGGAATATAAAATCTGCGGAAGCGGTGTTTAGAAAAATGAGGCACAAGAATGTAATATCATGGACAGCAATGCTAGTTGGTTATGGTCAGAATGGTTATAGTGAAGAAGCAATCAGGATATTTCGTGATATGCAGAGAAATGAGACTAATCCAGATGATTTTACACTAGGGAGTGTAATTAGCTCATGTGCAAACCTCGCAAGCCTAGAAGAGGGTGTGCAGTTTCATGGCCAAGCTTTAGCTTCTGGTTTAATTTGTTTTGTTACGGTTTCAAATGCTCTAGTCACTCTATATGGTAAATGTGGAAGCCTAGAATATGCCCACCAGTTGTTTCATGAAATGAAAATCAGGGATGAAGTTTCTTGGACAGCTTTAGTCTCAGGTTATGCTCAATTTGGAAAAGCTAATGAAACAATATCTCTGTTTGAAACGATGTTGGCCCATGGCATGGTACCTGATGGAGTTACTTTCGTTGGAGTTCTATCAGCTTGTAGTAGAGCAGGTTTAGTGGAGAAAGGTTATCATTATTTTGAATGTATGGTGAAAGAACATGGAATCACACCACTCCCCGATCACTACACATGCATGATTGACCTTCTCAGCCGAGCTGGAAGGTTAGAAGAAGCAAAAAACTTCATTAATCAGATGCCTTTTAGTCCCGATGCAATTGGTTGGGCCACATTGCTAAGTTCTTGTAGACACAATGGAAATTTGGAAATTGGTAAATGGGCTGCCGAGTCTCTTCATGAACTAGAGCCGCATAACCCTGCTAGTTATGTTTTATTATCAAGCATTTATGCTGCGAAAGGTAAATGGGATGATGTAGCAAAATTGAGGAAAGGAATGAGGGAAAAGGGAGTGAAAAAGGAACCTGGATATAGTTGGATCAAATATAAAAATAAAGTGCACATTTTCTCAGCAGATGACCGGTCAAGTCCCTTTGCAGATCAGATATATGCCAAGTTGGAAAGTTTATACCTGAAAATGATTGAGGAAGGATATGTGCCCGATATGAGTTTTGTTCTTCAAGATGTTGAGAAGTCTGAGAAGATTAATATGCTTAATCACCATAGTGAGAAACTTGCTATTGCCTTTGGTTTGATATTTATACCTGATGGCCTTCAAATACGTGTAGTAAAAAATCTCAGGGTCTGTGGCGATTGCCACAATGCCACAAAATACATTTCTAGGATCACCCAGAGAGCGATACTTGTAAGAGATGCTGTCCGTTTCCATTTGTTCAAGGATGGAGTGTGTTCATGTGGGGATTTCTGGTAGTGTTTTGCCTGACTAAAACCTCAGAATTATTATGCAAGTAACAAGCTTTCTTTTATTTGAGCATGAGACCTACCATCAATCTCAGATGTGTATGTACTTTTTGTGAGCTCGATTGATGATTGTTTTGTGCTTTCATGTAATTCAAAACTATCTCATAATTTCTACCTAACAAGAATTCCTTCAAGGATCAGAAGAAGGAACTGTTTTGTCCTACGAGCCATTGAGTATTACACCGTTCAATAAAGCTACTGGAGGTATCAAGATGAATTTATCCAAAGAATATTGGAAATATTTCTGGCTTGCGTGAAATCTGATGGTTGCTTGTAGTGTTCAAGTTCAAGAACGCCGTTTCAGCTGCAAGCGTGCTTGTAGAAAACCAACACTAGTGGTTGATCTGTGTATCCGAAGTGGTATTGCCAACTTTTCTCCAGATTGATTCCCATGACGAAATGAGGTTGAAACATGCCTACTTTGATGCATTTCCATTGAAAATTATCACAATTCAGAGAGTAACCACCGTCACTTCTCCCTCTTATTTTCAAGGACGTCTAATACAGAGGATAATGGCTGGCTTATCCTGCCATAGTGCTGATGCTTTCATCGGGGGAGTCTTAGTCTTCACCAAACGCTCCATTCCAATCTTATACTCTGGAGTTAATTTCTGAATGGAGATATTTTCA 3172 40.42 MSSSSNYYTAALKFCCEARNRAQVKKLHCRIIRTVPNIETFLYNNLINTYVKLGDLKNARNVFAQIPQPNLFSWNTLLSAYSKLGHLRDMKEVFDRMPEHDVVSWNSLLSGYAGNNLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDARRIFKEIPEKNIVVYNTMITGLLRCGFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGRESLCMDQFTFGSVLTACGGLLALDVGKQIHAYIVRTDYQDNIFVGSALLDMYCKCRNIKSAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAIRIFRDMQRNETNPDDFTLGSVISSCANLASLEEGVQFHGQALASGLICFVTVSNALVTLYGKCGSLEYAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGMVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHGITPLPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRHNGNLEIGKWAAESLHELEPHNPASYVLLSSIYAAKGKWDDVAKLRKGMREKGVKKEPGYSWIKYKNKVHIFSADDRSSPFADQIYAKLESLYLKMIEEGYVPDMSFVLQDVEKSEKINMLNHHSEKLAIAFGLIFIPDGLQIRVVKNLRVCGDCHNATKYISRITQRAILVRDAVRFHLFKDGVCSCGDFW 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42385823 42390387 + XM_039037103.1 Bhi07g01433 39822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01433 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 506 IPR002885 -
Bhi07g01433 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat family 101 145 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat family 233 280 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat family 334 383 IPR002885 -
Bhi07g01433 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 334 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat 438 467 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat 42 65 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat 510 534 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat 473 501 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat 410 433 IPR002885 -
Bhi07g01433 743 Pfam PPR repeat 179 204 IPR002885 -
Bhi07g01433 743 Pfam E motif 555 615 IPR046848 -
Bhi07g01433 743 Gene3D Tetratricopeptide repeat domain 33 155 IPR011990 GO:0005515
Bhi07g01433 743 Gene3D Tetratricopeptide repeat domain 165 233 IPR011990 GO:0005515
Bhi07g01433 743 PANTHER - 8 81 - -
Bhi07g01433 743 PANTHER - 216 373 - -
Bhi07g01433 743 PANTHER - 75 218 - -
Bhi07g01433 743 PANTHER - 286 615 - -
Bhi07g01433 743 Gene3D Tetratricopeptide repeat domain 242 389 IPR011990 GO:0005515
Bhi07g01433 743 Gene3D Tetratricopeptide repeat domain 501 669 IPR011990 GO:0005515
Bhi07g01433 743 Gene3D Tetratricopeptide repeat domain 390 500 IPR011990 GO:0005515
Bhi07g01433 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Bhi07g01433 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Bhi07g01433 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Bhi07g01433 743 Pfam DYW family of nucleic acid deaminases 651 743 IPR032867 GO:0008270
Bhi07g01433 743 SUPERFAMILY TPR-like 32 616 IPR011990 GO:0005515
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 438 471 IPR002885 -
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 103 133 IPR002885 -
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 310 336 IPR002885 -
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 72 103 IPR002885 -
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 205 233 IPR002885 -
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 511 534 IPR002885 -
Bhi07g01433 743 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Bhi07g01433 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01433 - - - csv:101217254 1422.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03675 Bhi-Chr1:93874902 Bhi07g01433 Bhi-Chr7:42385823 1.04E-14 dispersed
Bhi03g02774 Bhi-Chr3:71238304 Bhi07g01433 Bhi-Chr7:42385823 1.01E-174 dispersed
Bhi07g01433 Bhi-Chr7:42385823 Bhi07g01435 Bhi-Chr7:42386166 7.29E-15 dispersed
Bhi08g00224 Bhi-Chr8:9135698 Bhi07g01433 Bhi-Chr7:42385823 1.82E-176 dispersed
Bhi08g00225 Bhi-Chr8:9135698 Bhi07g01433 Bhi-Chr7:42385823 1.82E-176 dispersed
Bhi12g01873 Bhi-Chr12:59979678 Bhi07g01433 Bhi-Chr7:42385823 2.62E-17 dispersed
Bhi07g01433 Bhi-Chr7:42385823 Bhi07g01434 Bhi-Chr7:42385823 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1009 . . . . . . . . Cmo04g01064 . . . Car04g00928 . . Cpe09g00246 . Bhi07g01433 . . . . . . . . . . . . . . . . . . . . . . . Bda07g01508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011082 1 3 0 0 1 0 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 0 0 0 1 0 0 0 1 19