Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01438 TGCAGATGATTGCTGATTCTTTCAGCTGTACTGATTGTGTATCAAAGCTAGCAAGCAGTGGCATATGGTAGGAAATGTGTATTCTTCAAAGGGAAACTGTTGAAGTCACATGGCCACCATGAGCTGAGAGAGGAAAACTCTATTTATGTCGAGAGCAATGACGACAAAGCCAAAAATATCTTTGGCTGAACTTATCTTAACTTCCATCTCAGAAATCATAGATTCTAAAGCGTGCACGGAAGAAGAACATGGAAAATTAATTGAGATTGGAAGCTACTTTTATCGAGCAGCTTTGGCTGTTGCGGAGTTGCAGGCAATAGACCCAATAAAATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCATGCAAAGGAACTAGTGGAGAAGTTCCAAAATGGCATTCAACCAGTCTCAGATTCTGATCCAATTAGCATCATAAATCCACTAGAAGAGGTGATAAAACAAATGGGTGAATGCTTAAACAAGATAGCAATCGCTACATTTGAGGAACAGAGTTATGTGAAAATGGCAATTCTATCACTTTCAGATGAGATGAAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATTATGAACAAACAAGAGATTCAAACTTCTTTGGAGGAACAATCAGAAAAAGAACCAGAAGTTATAGAGAGAGATCTATACCCCATTGACATGGACTGGGACACAAACAATACACAATCCTCAGTTGTATCGGAGTCAAATACAAACGGAAGAAGAAGCCAAATGAAGTATAGAAATGTTACATCATCCATGGAAAAACTACCCTTAATGAACCATTACATAGAACCTCTCTTTGAAACCTTCATCTGCCCATTGACAAAGAATATCATGGATGATCCAGTTAGCTTAGAAACAGGAGTGTCATATGAAAGGCAAGCAATTGTTGAGTGGCTTGAAGAGTTCAAAGAATCCGAGGAAATTTTCTGCCCAGTCACGGGGCAAAAGCTTGTCTCCAAAGCTTTCAATTCCAACAGAGCTCTGAAGTCTACAATAGAAAAATGGAAGGAGCGCAATGAGATAGCAACAATCAAAGTCACCAGGGCTGCACTGTCTTTAGCCAGTTCAGATGATATGGTGCTTGAGGCAATCAAAGACCTGTCGAGTATCAGCAAAGGGAAGCAGTTCAACATAGAACGGATCTTCAATTTTGGCATGTTACCTTTGCTCATTAACTTTTTGGAGTACAGAGACAGAGATGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAATCAATGAAGAAAACAAGGTAACGATCTGTAACCAATTGGACGTGTCAAGAATAATCAATCTACTATCAAGTAGTCATAGGTCCATTCGGGATACAGCTTTGCTTCTGTTGTTTGAGCTTTCAAGATCCGAGACATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTTTGATGCTGATTATCATGAAGAACAATAGGTCCGACGAATTTGCTTCAGAAAAGGCAGATGAAACGTTGAGAAACTTAGAGAAATCTCCAAAAAATATCAAGCTTATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATTAGGCATGATTGTTTGTCGTATGTAGCTGAGAGGGCCTCTCCAGTTCTTGTCAAGATGGTGCATGAAGGAGATACATTTGTTCGCAGGGCAGCATTTAAAGCTCTATTGCAAATTTCATCTCACATGCCTAATGGTAAAACACTTGCAAAAGCTGGAGCTGTGCAAGTCATGGCTGAAGAGATGTTCACTCGTACTATTTGTGATGAACTTAATGACCCAAAAGCAGAAGCAACTAAAATACTGGCAAATATATGCGAATCCAGTCTTGATCTTGAGACACTTCAAGTTAACGCTCATGGCTACACTATGAGTTCAGACTATGTAGTCTACAACATTATCGACTTGCTCAAGAACTCGACCCCAGATGAATTTAAATTTAGCACGAGTCTCATCAGAATACTATTATGCTTGACAAAATCTCCAAAACCAAAGGACACCCTTATTTCAGGTGTAAAAAACACTGAAGCATGTGATACCCTCATAGATTTCATAAATAGTCCAGATGAAGAACTTGGAGCTGCAGCAATAAAACTGCTCATATCACTGTCCCCTTGCATGGGCTTCACAATGGCAGAAAGACTCTGCAAAACCAGTGACCAAATGGAGAACCTAATCAGTAGCATTACCTTGACAAACCACATCACAGAGAAGCAGACACTTTCAGCAACATTCTTGGCAAAACTACCTCATGAGAGCCTAGCTCTCAACACCATTATTGTAAACAAGAACATCGTGCCCAAGCTCCTGCAAACAATCAATCAAATACAGAACAGTGGAACAGGAATGGGCAGGTATGCAAGTGCTTTACTAGAGGGTTCAGTGGGAATTCTTGTCAGATTCACAGCAACACTTTACGACCCACAAATGTTGTTTCTAGCAAAATTTCACAATTTTACGTCAGTGTTTGCTAACCTGCTCGTGCAAACATCAAGCAATGAAGTCCAAAGGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGCATCCACCAGTCTATCCAAGCCCCTGAACAATAAAAGCAACAAGGTAATGAAATTTCTCCACTTACCCAAGCTTCTAACGCTAGGTCCATCAAAGAAGGGTAACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAGGCAATTGAAAAGCTATTGACGTGTTTAGACAATGAGAACGAAGAGATAGTTGAGGCAGCTTTGTCCGCCATTTGTACGCTTGTGGATGACAAAGTGGATCTGGATAGAAGTGTGAGCCTGCTGAACGAATTTGACACAATAAGGCATGTCCTGAATGTGGTGAGGATCCATAAGCAAGAATCTGTATGGCATAAATCATTCTGGTTGATCGAGAAGTTCTTGATCAAGGGTGGGGAAGAATCTCTTTCCAGTATATCACAGGACAGATCGTTGCCTGCAATATTGGCTACTGCTTCCCATCAAGGCGACAGCGAGATGAAGGGAATAGCAGAAAAAATATTGAGCCATTTGAATATGGTACCAAATTTCTCTGCCCCTAATTATACTCTATGATCTTACCCTGTTCGTAACTTCTCGGAATTTGCTGCTGGCTGCGTTTGTGAAGCTGATTAACGTCGGTCAATAGCTCCGGCATACACTGCTCCGACAAGATGGAATTCAATTCATGAGAAAACCTTGTAAATTCCTAGAACGATTAGCAAAGGAAATGCATACAGGATTAAGATCAAATAAAAG 3385 40.59 MSRAMTTKPKISLAELILTSISEIIDSKACTEEEHGKLIEIGSYFYRAALAVAELQAIDPIKFDEILQSLNKSINHAKELVEKFQNGIQPVSDSDPISIINPLEEVIKQMGECLNKIAIATFEEQSYVKMAILSLSDEMKNISTKIVQAQAIMNKQEIQTSLEEQSEKEPEVIERDLYPIDMDWDTNNTQSSVVSESNTNGRRSQMKYRNVTSSMEKLPLMNHYIEPLFETFICPLTKNIMDDPVSLETGVSYERQAIVEWLEEFKESEEIFCPVTGQKLVSKAFNSNRALKSTIEKWKERNEIATIKVTRAALSLASSDDMVLEAIKDLSSISKGKQFNIERIFNFGMLPLLINFLEYRDRDVRYAVLELLHQMAEINEENKVTICNQLDVSRIINLLSSSHRSIRDTALLLLFELSRSETLSDPIGSVTGGILMLIIMKNNRSDEFASEKADETLRNLEKSPKNIKLMAEGGLMEPLIRHLTEGSEWMRIEMASYLGEIVIRHDCLSYVAERASPVLVKMVHEGDTFVRRAAFKALLQISSHMPNGKTLAKAGAVQVMAEEMFTRTICDELNDPKAEATKILANICESSLDLETLQVNAHGYTMSSDYVVYNIIDLLKNSTPDEFKFSTSLIRILLCLTKSPKPKDTLISGVKNTEACDTLIDFINSPDEELGAAAIKLLISLSPCMGFTMAERLCKTSDQMENLISSITLTNHITEKQTLSATFLAKLPHESLALNTIIVNKNIVPKLLQTINQIQNSGTGMGRYASALLEGSVGILVRFTATLYDPQMLFLAKFHNFTSVFANLLVQTSSNEVQRLSAIGLEKLSSASTSLSKPLNNKSNKVMKFLHLPKLLTLGPSKKGNLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEIVEAALSAICTLVDDKVDLDRSVSLLNEFDTIRHVLNVVRIHKQESVWHKSFWLIEKFLIKGGEESLSSISQDRSLPAILATASHQGDSEMKGIAEKILSHLNMVPNFSAPNYTL 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42393080 42398200 - XM_039036461.1 Bhi07g01438 39827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01438 1018 ProSiteProfiles HEAT repeat profile. 349 385 IPR021133 -
Bhi07g01438 1018 Gene3D - 796 1012 IPR011989 -
Bhi07g01438 1018 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 9 1017 - -
Bhi07g01438 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 312 IPR013083 -
Bhi07g01438 1018 SMART Ubox_2 231 298 IPR003613 GO:0004842|GO:0016567
Bhi07g01438 1018 SUPERFAMILY ARM repeat 317 637 IPR016024 -
Bhi07g01438 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1017 - -
Bhi07g01438 1018 SMART arm_5 379 419 IPR000225 GO:0005515
Bhi07g01438 1018 SMART arm_5 337 377 IPR000225 GO:0005515
Bhi07g01438 1018 SMART arm_5 877 917 IPR000225 GO:0005515
Bhi07g01438 1018 SMART arm_5 463 503 IPR000225 GO:0005515
Bhi07g01438 1018 Coils Coil 67 87 - -
Bhi07g01438 1018 Pfam Armadillo/beta-catenin-like repeat 877 915 IPR000225 GO:0005515
Bhi07g01438 1018 Pfam U-box domain 230 303 IPR003613 GO:0004842|GO:0016567
Bhi07g01438 1018 Gene3D - 313 506 IPR011989 -
Bhi07g01438 1018 ProSiteProfiles U-box domain profile. 227 305 IPR003613 GO:0004842|GO:0016567
Bhi07g01438 1018 SUPERFAMILY ARM repeat 476 1005 IPR016024 -
Bhi07g01438 1018 Gene3D - 507 686 IPR011989 -
Bhi07g01438 1018 CDD RING-Ubox_PUB 232 278 IPR045210 -
Bhi07g01438 1018 Coils Coil 288 308 - -
Bhi07g01438 1018 SUPERFAMILY RING/U-box 221 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01438 - - - csv:101217719 1621.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01222 Bhi-Chr4:29519630 Bhi07g01438 Bhi-Chr7:42393080 4.32E-134 dispersed
Bhi07g00896 Bhi-Chr7:30131313 Bhi07g01438 Bhi-Chr7:42393080 1.55E-36 dispersed
Bhi07g01438 Bhi-Chr7:42393080 Bhi08g00620 Bhi-Chr8:20447784 4.64E-17 dispersed
Bhi07g01438 Bhi-Chr7:42393080 Bhi08g00619 Bhi-Chr8:20447784 4.64E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29