Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01446 TTATTTTGCTATCTTCGTATCGATGGCTAAAAAACGGCCGCACCCAGAACGATGGCTGCTGCCTTTCAAAATTGCCGCGAAACCCATCGTTTCGCTAAAACCCTAAGTCAGCTGTGGCTGTTTTATGATCCCTCCAACTAATCCCCAACTTTGTTCATCTTAATTTCACACTGTGGGAGACGAGAAGACGGCAGGGTTTCTCCCAATCCTGCTCCCATTTCCATGCTTAGCCGTATTCATCAATGGAAGCCATTACATTTTCTGAGGAAATGCGGGATACTGGCTTCTTTTAGTTCCGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCCCGGGTCGAAGAGGAAACCGTCACTACCTCCTTCTTTCTGAACCAGAACGACCCAGTTCATGAAATTCTCACAGGTTTGAATTCCCTTGGGTTTAGAGCATATGTTGGTGGATGTAGCTTTCAAACTGTTGTTTCTACTTTGAGTGAAACTGTAGTGGATGGCGTTCTTGCTAGCTTGAGAACTCAGAATTCTGAGGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAACGAGTACGGATTTCGGCATTCTGGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCTGGTAAAGGACGATTCAAGGAGTTGCATTCCATTTTAAAGCATTTGCTTGAGGAGCAAGGGTTGGGTTCTGCGTCTACCTTTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATGGTGTAGTATGGGATATGCTGGCATTTTCGTACTCTAGACTTGAAATGATTCATGACGCCCTCTTTGTTATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGGATATATACAATGAGATCAAAGTTAGTGGAGCTCCTCATGGTGAATATACTACATCAATACTTATACATGGCCTATGCGAGCAATCCAAGTTACAGGATGCGATTTCATTTCTACAGGACAGTAATGAAGTAGATGGACCTTCTATTGTGTCTATTAATACCATTATGTCAAAGCTTTGCAAAGTGGGGCTGATAGATGTTGCGAGGTCATTTCTTTCTTTGATGGTCAAGAATGGACTTCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACTTACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCGGAAAGTTGTCCAAAAAATGTTGCTAAAAGGTCTAAATCCAGATCTTGTGACGTATACAATACTGATGTGTGGACATTGTCAGATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGTGTGCTACTTAGCTGTTTGTGTAAAGTTGGACAAATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTCTATGTTTGAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGCAAGGGCTTGTTCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTGGGTCTTTTTAAGAATGGAAATATATCTGAGGCAAGAAAATATTTTGATGCTTTGACTCATATGGATCTGATTGAGGATGTTATTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATCACTGAGGCTATGCAGCTATATTACAGAATGATTGAAAGGAGGATCACTCCAAGTATTGTCACTTTCAACACCCTTGTCAATGGATTCTGCAGAAGGGGAGACCTAATGGAGGCTCGAAAGATGATGGAAGTCATTAGGTTGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGCGAAGTGGGGAACATGCAGGAAATGTTTGATCTTCTTCATGAGATGGAAGCAAACAGTGTCGTTCCAACTCATGTAACTTATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAATCCCTCCAGTTGCTAGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACTATTATCCAATGTTTTTGCAAGGGAAGAGACATTGCCAAAGCTTTCCAGCTTTATAATAAGATGTTGCTTCATAATCTTGATCCTACCCAGGTAACTTATAACGTACTTATTAATGGTCTTTGTATGTATGGTGACCTAAAGGATGTGGATCGAATGCTAGTTTCTATGGAGGATCGAAATATTAGCTTGACAAAAGTTGCTTATATGACACTAATTAAAGCACATTGTGCAAAGGGTGAGGTCTCTAAAGCATTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCGATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGAGGTCTAATTACAGAAGCGAAGCACTTCTTTGTTATGATGTTATCAGAAGGCGAAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGCTTTCCATCAACAGGGTGATAACAGTTCAGTGTTTGAATTCCTTGCTATGGTGGTTAAATCTGGCTTTATTTCACATTGATCCATTCCTTGCTATGGTGGTTGAATATGGCTTTATTTCACATTGATCCATCTATAAGTGTGATCATTTGATCACATCATATGCTGTTGCAGATAACTTGTCCTTTTTGGCATAAAAGGTTAGCACGAGGTACAGGGTGTAGAGGTTAAATTTCCCTCTCTGGAATATATCAAACTTTATGCCGCAGATAATCAACGAAAGGAAAATCATGTCAATGACCCTCATGGGGCTCTCCCAGCCTGGAGGCTGCAGCAGACTTATTGAGTGGGTGCTTATGACGAGCTGTGCTAACAACTATAAGCTGAGCTTGATTCCTTGCAACTAGTTGTATTCGAGGTAAGGAATTCTCGGAGCCTGAGGAGCATCAGTTTCAGATCTCCCGTCTGTATTTGTTAAATATGGCGGAGGGTTGCTTCGGATCGGAAACCAAATTCTAAAACACCAACCGTGGATACTTGAAGGGATTTAAAGGCCGTTTGGTAAAATTGGGAGAGTTAGGTTGGGTGAGCTTACACTGATAAAATAAAAACAGTGAGATATTAAATTCACCGTTTTACTCCCAATTTAACTTCCTTAATTTGGTACATTTGAAATTACTCTCCCAATTCTTCTCTGTCATTTCTCTTGCTCCCTCATCAGTCTTTTCACATTACTCCCGTTCTTATCTCTTTCATTTTTTTTCATCTGTCTGGTTCGTCTTCTTTATCTCTATTTTTCTTCCTCAGATTCTCTTCTTTTGCTCAATCACATGGGTCTTTTCTTGTTGAATCACTCTCTGCTCTTCTCTGTATATTTTTTTAAGGTTATTTTCATGATTTTACTACGTATGTGATTATTTGTTGTAGATCCAACTAAGTTTCTTCTTCCTCTTTCGGTTTTTTGTTCA 3610 39.56 MLSRIHQWKPLHFLRKCGILASFSSVILARPSVSAARVEEETVTTSFFLNQNDPVHEILTGLNSLGFRAYVGGCSFQTVVSTLSETVVDGVLASLRTQNSEVAVAFFYLLRNEYGFRHSGFSQFAVSHILAGKGRFKELHSILKHLLEEQGLGSASTFCDLLLNKFRNWDSNGVVWDMLAFSYSRLEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWDIYNEIKVSGAPHGEYTTSILIHGLCEQSKLQDAISFLQDSNEVDGPSIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFKNGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCRRGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLMPDPVTYNTIIQCFCKGRDIAKAFQLYNKMLLHNLDPTQVTYNVLINGLCMYGDLKDVDRMLVSMEDRNISLTKVAYMTLIKAHCAKGEVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKHFFVMMLSEGETPDSEICETMLNAFHQQGDNSSVFEFLAMVVKSGFISH 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42634344 42638685 - XM_039036464.1 Bhi07g01446 39835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 403 512 IPR011990 GO:0005515
Bhi07g01446 833 Pfam PPR repeat family 657 705 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat family 587 636 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat family 272 320 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat family 377 426 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat family 518 566 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 651 726 IPR011990 GO:0005515
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 581 650 IPR011990 GO:0005515
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 513 580 IPR011990 GO:0005515
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 335 402 IPR011990 GO:0005515
Bhi07g01446 833 SUPERFAMILY HCP-like 362 552 - -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 728 762 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat 444 475 IPR002885 -
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 220 334 IPR011990 GO:0005515
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat 345 375 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat 767 794 IPR002885 -
Bhi07g01446 833 Pfam PPR repeat 730 758 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 738 832 IPR011990 GO:0005515
Bhi07g01446 833 Gene3D Tetratricopeptide repeat domain 76 219 IPR011990 GO:0005515
Bhi07g01446 833 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 17 830 - -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 625 658 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 695 727 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 767 798 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 730 763 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 521 553 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 660 693 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 450 483 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Bhi07g01446 833 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Bhi07g01446 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Bhi07g01446 833 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 17 830 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01446 - - - bhj:120081514 1658.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01444 Bhi-Chr7:42634344 Bhi07g01446 Bhi-Chr7:42634344 0 dispersed
Bhi07g01446 Bhi-Chr7:42634344 Bhi02g01464 Bhi-Chr2:40022535 1.19E-85 dispersed
Bhi07g01445 Bhi-Chr7:42634344 Bhi07g01446 Bhi-Chr7:42634344 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32