Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01472 CCCCCATTTTTCTTCATCATTCATCATCATCTTCTTCATCTTCTTCATCTTCTTCATCTTCTTCATCTTCTTCATTAATTAATTATGAGCAACTCCAACTCCGACGACAAATCTTCCATGGATTTGGTTCAACCATCTGAGCATCTCTGTTATGTCAAATGCAACTTCTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACGGTAAAATGTGGTCATTGTAGTAATCTCTCGTTCTTGAGCACAAGACCTCCTCTACAAGGTCAATGTATTGACCATCCCCTAAGTTTTCAGGTTGGATTCTCTAATGATATTCGAAAGGGCGCTTCCACATCGTCCACTTCCACGTCCTCTTCCTTGACTAACGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCACCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTTATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTTAGTGCAGCAGCAAAGAACTGGGCAAGGTATATTCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCACAACAAAGAATGAAAAGGGTTTAGGGTACCAGAAGAATCGGACAAATCGAATGGCTGTCCTAGGGTTTGATGAAGTTAAGATTTGGCCATGTCTTTGTCTCGGTCTTTTTGTTTCTTCCTCGTA 717 42.12 MSNSNSDDKSSMDLVQPSEHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQVGFSNDIRKGASTSSTSTSSSLTNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNKE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43206383 43209683 - XM_039037416.1 Bhi07g01472 39861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01472 173 MobiDBLite consensus disorder prediction 87 116 - -
Bhi07g01472 173 CDD HMGB-UBF_HMG-box 118 154 - -
Bhi07g01472 173 MobiDBLite consensus disorder prediction 87 107 - -
Bhi07g01472 173 SUPERFAMILY HMG-box 104 155 IPR036910 -
Bhi07g01472 173 Gene3D High mobility group box domain 106 160 IPR036910 -
Bhi07g01472 173 PANTHER PROTEIN CRABS CLAW 10 171 - -
Bhi07g01472 173 Pfam YABBY protein 17 157 IPR006780 GO:0007275
Bhi07g01472 173 PANTHER PROTEIN YABBY 6-RELATED 10 171 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01472 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 298.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01472 Bhi-Chr7:43206383 Bhi12g00406 Bhi-Chr12:13603558 3.62E-41 dispersed
Bhi07g01472 Bhi-Chr7:43206383 Bhi07g01473 Bhi-Chr7:43206383 1.35E-127 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g01473 . 5 173 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 6.0e-47 184.9
Bhi07g01472 . 5 171 C2C2-YABBY Transcription Factor Family AT1G69180 55.3 1.0e-46 184.1
Bhi12g00406 . 84 243 C2C2-YABBY Transcription Factor Family AT2G45190 58.9 3.1e-42 169.1
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT1G08465 66.7 3.2e-56 215.7
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 8.8e-46 181.0
Bhi02g00976 . 6 177 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 1.7e-44 176.8
Bhi10g00205 . 1 141 C2C2-YABBY Transcription Factor Family AT1G08465 65.0 1.4e-43 173.7
Bhi12g00406 . 40 233 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 9.1e-43 171.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT1G08465 63.3 1.5e-42 170.2
Bhi12g00406 . 51 242 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 3.9e-50 195.7
Bhi07g01745 . 1 174 C2C2-YABBY Transcription Factor Family AT1G23420 50.8 3.0e-39 159.8
Bhi02g00976 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.1e-63 238.4
Bhi06g01929 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 3.0e-61 232.3
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 4.4e-49 191.8
Bhi12g00406 . 42 205 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 2.5e-44 176.0
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT2G26580 61.5 8.4e-40 161.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 2.3e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1577 PF04690 YABBY 2.50E-52 CL0114 Bhi TF