Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01473 CCCCCATTTTTCTTCATCATTCATCATCATCTTCTTCATCTTCTTCATCTTCTTCATCTTCTTCATCTTCTTCATTAATTAATTATGAGCAACTCCAACTCCGACGACAAATCTTCCATGGATTTGGTTCAACCATCTGAGCATCTCTGTTATGTCAAATGCAACTTCTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACGGTAAAATGTGGTCATTGTAGTAATCTCTCGTTCTTGAGCACAAGACCTCCTCTACAAGGTCAATGTATTGACCATCCCCTAAGTTTTCAGTCTCAGGTTGGATTCTCTAATGATATTCGAAAGGGCGCTTCCACATCGTCCACTTCCACGTCCTCTTCCTTGACTAACGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCACCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTTATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTTAGTGCAGCAGCAAAGAACTGGGCAAGGTATATTCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCACAACAAAGAATGAAAAGGGTTTAGGGTACCAGAAGAATCGGACAAATCGAATGGCTGTCCTAGGGTTTGATGAAGTTAAGATTTGGCCATGTCTTTGTCTCGGTCTTTTTGTTTCTTCCTCGTA 723 42.19 MSNSNSDDKSSMDLVQPSEHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSLTNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNKE 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43206383 43209683 - XM_039037415.1 Bhi07g01473 39862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01473 175 CDD HMGB-UBF_HMG-box 120 156 - -
Bhi07g01473 175 Pfam YABBY protein 17 159 IPR006780 GO:0007275
Bhi07g01473 175 PANTHER PROTEIN CRABS CLAW 10 173 - -
Bhi07g01473 175 MobiDBLite consensus disorder prediction 87 118 - -
Bhi07g01473 175 PANTHER PROTEIN YABBY 6-RELATED 10 173 IPR006780 GO:0007275
Bhi07g01473 175 SUPERFAMILY HMG-box 106 157 IPR036910 -
Bhi07g01473 175 MobiDBLite consensus disorder prediction 87 109 - -
Bhi07g01473 175 Gene3D High mobility group box domain 108 162 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01473 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 306.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01473 Bhi-Chr7:43206383 Bhi12g00406 Bhi-Chr12:13603558 2.75E-41 dispersed
Bhi07g01472 Bhi-Chr7:43206383 Bhi07g01473 Bhi-Chr7:43206383 1.35E-127 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g01473 . 5 173 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 6.0e-47 184.9
Bhi07g01472 . 5 171 C2C2-YABBY Transcription Factor Family AT1G69180 55.3 1.0e-46 184.1
Bhi12g00406 . 84 243 C2C2-YABBY Transcription Factor Family AT2G45190 58.9 3.1e-42 169.1
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT1G08465 66.7 3.2e-56 215.7
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 8.8e-46 181.0
Bhi02g00976 . 6 177 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 1.7e-44 176.8
Bhi10g00205 . 1 141 C2C2-YABBY Transcription Factor Family AT1G08465 65.0 1.4e-43 173.7
Bhi12g00406 . 40 233 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 9.1e-43 171.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT1G08465 63.3 1.5e-42 170.2
Bhi12g00406 . 51 242 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 3.9e-50 195.7
Bhi07g01745 . 1 174 C2C2-YABBY Transcription Factor Family AT1G23420 50.8 3.0e-39 159.8
Bhi02g00976 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.1e-63 238.4
Bhi06g01929 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 3.0e-61 232.3
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 4.4e-49 191.8
Bhi12g00406 . 42 205 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 2.5e-44 176.0
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT2G26580 61.5 8.4e-40 161.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 2.3e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1578 PF04690 YABBY 1.10E-55 CL0114 Bhi TF