Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01546 GAAAAAAAAGTGTTGGTCTGTAGTGACGGTGGTTAATTAGTCACAGCCAGCCTTTTTTCTCCTTCTCAGAATTTCTATATATTGTCCCCTAAACTCTCCTAATTTCTCACTCCTCTGCTCCTCTCTGTTCCTTCATTCCTTACTTCTTTCCTTCTGGAATGGCTTCTATCCTTATCTTTTTGGCAGGTTTCTTTGCCATAGTTTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCGGGGACAATGGGTGGAGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCCAGTGACCCTAAATGGTGCCTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTTCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGAATTGTTCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACCATCAATGGACACTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACTCAGTTTCTATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAATTGGCAAAGCAACAGCTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGACGGCCGAACTGTCATCTCCAACAACGCTGTTCCAGCCGGCTGGTCCTTTGGACAGACTTACAGTGGTGCCCAATTCTGATTTATTACCTTCTCTAGCTAAAATAAGCTTTATGGTTATGCAGAGTAAAGCAATCTAGTGTGACTTCTTATTTTTTCTTTTTTCTTTACCTTAAAGTATACTAGAGTATTAGATATATAGTATACTATGTGAGTGTTTGAGTCAAAAAAATGAGGAAAGGGCTTATTTTGGGAGGCTCTTTCTTATCATTTTGATTCAAATTGCAACATTGAATGAGTGCCTTAATGGCTACTTAATGTGATTTTTTACCCTAACTTTTGCTATAAAGCAGAAGTTGGCAGAGGTGGGCTCTAACCACCCGCCTGCATTTTAGTTACTATTGTGAGTTCATTGTAATCATTAATCAGCTTTCTGCCGCTCTACTTGTATTTGTTGTATTATTGGTTGCTGAAAGTGTAAATTTTCAGTTTCCTCAAGTAATGAAAGACCGCAGACTTTTATTTAA 1350 43.63 MASILIFLAGFFAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 44523309 44525013 + XM_039035396.1 Bhi07g01546 39935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01546 248 PANTHER EXPANSIN-A15 6 248 IPR002963 GO:0009664
Bhi07g01546 248 Gene3D - 156 248 IPR036749 -
Bhi07g01546 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Bhi07g01546 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Bhi07g01546 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Bhi07g01546 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Bhi07g01546 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Bhi07g01546 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Bhi07g01546 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Bhi07g01546 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Bhi07g01546 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Bhi07g01546 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Bhi07g01546 248 Gene3D - 12 152 IPR036908 -
Bhi07g01546 248 PANTHER EXPANSIN 6 248 - -
Bhi07g01546 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Bhi07g01546 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Bhi07g01546 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Bhi07g01546 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Bhi07g01546 248 SMART dpbb_1 61 146 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01546 Bhi-Chr7:44523309 Bhi10g00718 Bhi-Chr10:15399062 1.76E-126 dispersed
Bhi04g00118 Bhi-Chr4:3133777 Bhi07g01546 Bhi-Chr7:44523309 8.62E-120 transposed
Bhi04g02252 Bhi-Chr4:61638069 Bhi07g01546 Bhi-Chr7:44523309 1.67E-142 transposed
Bhi06g00891 Bhi-Chr6:23389068 Bhi07g01546 Bhi-Chr7:44523309 2.32E-149 transposed
Bhi07g00459 Bhi-Chr7:20231745 Bhi07g01546 Bhi-Chr7:44523309 3.31E-140 transposed
Bhi11g00747 Bhi-Chr11:19584276 Bhi07g01546 Bhi-Chr7:44523309 2.89E-79 transposed
Bhi02g00307 Bhi-Chr2:5816495 Bhi07g01546 Bhi-Chr7:44523309 2.08E-147 wgd
Bhi06g00385 Bhi-Chr6:8321065 Bhi07g01546 Bhi-Chr7:44523309 6.86E-143 wgd
Bhi07g01546 Bhi-Chr7:44523309 Bhi08g01146 Bhi-Chr8:36264506 7.10E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01546 - - csv:101217956 508.449