Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01564 CAAACAAAACAAACATGAAACCCAACTACTCAATCTTCATATTCAAGCTTCTCCTCTTGCAATATCTATCATCCCAGCTTTGTCTTTCTCAGGATTTCGATTTCTTCTACTTTGTTCAGCAGTGGCCGGGAGCATATTGCGATACAAAGCAACAACGGTGTTGCTATCCTAAAACAGGAAGGCCTGCTGCAGATTTTGGTATTCATGGCCTTTGGCCTAATTACAAAGATGGAAGCTACCCGTCCAACTGCGATCACAATAGCGTTTTCGACCGAACCCAGATTTCAGATGTATTAAGCAGCATGGAAAAGCATTGGCCATCATTGAGTTGTCCAAGCAGCAATGGGTTAAGATTTTGGTCACACGAATGGGAGAAGCATGGCACGTGCTCTGAGTCCGAACTAGACCAGAGAGAATATTTTGAAGCAGCTGTTAAACTCAAGGAGAAGGCCAATCTCCTCAAACTCCTTAATAATGCGGGAATTGAAGCAAATGATGAGTTTTACAGTTTGGAGAGCGTAAGAAATGCCATAGAAGAAGGGATTGGGTTTACTCCTGGGATTCAATGTAATAAAAATTCAGCTGGCAATGCTCAACTTTACCAAATTTATTTATGTGTTGATACTTCTGGTTCTCAGTTCATCAAATGTCCAATTCTTCCCAAGCCAAAATGTCCTTCCACTATCCAATTCCCCAAGTTTTAATTTAATCGCTTTAATTCATTTCTAGCTACATTAATTTTACATTTTTTTTTAATTCCCTTGTAATTTCATTCGCTAATTATCCCTTATGTTTAGCTTTATGGATTATAACCAGCAATCATTTGCTTGCTAATAAAATTAATCACTTTGATTCA 856 38.43 MKPNYSIFIFKLLLLQYLSSQLCLSQDFDFFYFVQQWPGAYCDTKQQRCCYPKTGRPAADFGIHGLWPNYKDGSYPSNCDHNSVFDRTQISDVLSSMEKHWPSLSCPSSNGLRFWSHEWEKHGTCSESELDQREYFEAAVKLKEKANLLKLLNNAGIEANDEFYSLESVRNAIEEGIGFTPGIQCNKNSAGNAQLYQIYLCVDTSGSQFIKCPILPKPKCPSTIQFPKF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 44724989 44726786 - XM_039037099.1 Bhi07g01564 39953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01564 229 PANTHER RIBONUCLEASE T2 5 229 IPR001568 GO:0003723|GO:0033897
Bhi07g01564 229 ProSitePatterns Ribonuclease T2 family histidine active site 1. 61 68 IPR018188 GO:0003723|GO:0033897
Bhi07g01564 229 Gene3D - 22 229 IPR036430 GO:0003723|GO:0033897
Bhi07g01564 229 SUPERFAMILY Ribonuclease Rh-like 23 228 IPR036430 GO:0003723|GO:0033897
Bhi07g01564 229 Pfam Ribonuclease T2 family 28 212 IPR001568 GO:0003723|GO:0033897
Bhi07g01564 229 PANTHER F7A19.32 PROTEIN 5 229 - -
Bhi07g01564 229 CDD RNase_T2_euk 28 223 IPR033697 -
Bhi07g01564 229 ProSitePatterns Ribonuclease T2 family histidine active site 2. 114 125 IPR033130 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01564 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] - csv:101218904 406.371
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00392 Bhi-Chr6:8697848 Bhi07g01564 Bhi-Chr7:44724989 1.29E-33 dispersed
Bhi07g01564 Bhi-Chr7:44724989 Bhi11g02981 Bhi-Chr11:80584813 1.86E-41 dispersed
Bhi07g01564 Bhi-Chr7:44724989 Bhi07g01565 Bhi-Chr7:44823286 9.32E-102 tandem
Bhi06g00391 Bhi-Chr6:8697848 Bhi07g01564 Bhi-Chr7:44724989 1.06E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g920 . . . . . Bpe10g00875 . Bma15g00155 Cmo04g01738 . . . . . Sed06g0633 . Cpe01g01467 Bhi07g01564 Tan04g1076 Cmetu04g1025 Lac13g0321 Hepe10g1745 . . . . . . . . . . . . . Lsi04g00423 Csa05g02454 . Cme10g00413 . . . . . . . . . . . Cma04g01660 . Car04g01699 . Cpe13g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002941 1 2 0 1 2 1 2 1 1 1 1 2 3 1 2 3 2 3 3 2 1 2 1 2 2 2 2 3 2 3 54