Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01608 CTATTTTCCATCCATCGGCTCCTTCGTTTGCTTCTGTTCTCATCTTCGTTTTGAGGGCGAATGATTTTGTATTACAGAATTGAAAAACACATCGTTCCTCATCTACGTGGTCACTCTCTGTCACAATGATTGGGACTACCATCGGCGGACCCTCACCAATTCCTCGGTTTTTCGGTAAATCTGCGGCAACCCACCAACAAAATTACACCCCCATCTTCATGATTTACATTGTTGTAATCTTTCTGATATAATCACAGGTTTAGAACAATGGGGTAATCATCATTTTAATCTTTTGTGGCCAAAGGAGGGGGTGATTTCAATTTTCAACCAGAAATATCGTGCCGGGAATTTGTGAACGCCCTTCATTCTGCTTTCGTTTTCATTTCCAATCACGACGGCGTGATGGGGTTATTTGGTTTCTGAATCAATTTCATTCCAATTTTCTCATCGCACCGAAATATGGGTTGCGAAGAAATTTTGTTGATCACAATCTACGCGATATTTTCCCTTCTTATTCGCAGTAATATGGTGAACACTCGTAGTTGCTAAGTGTACTCTTCCAGTGAGGAGCCCCCTCGGATTCTTTGATACGGATTCATTATAGGGTTTTTGTTTGTTTTCCTCCTTGATTTTATATATTGCAGTTCAAAGCTTCTTCGAGAGACTGAACCCGCGGTTTGAGTGCCACATGGGATTGGGATTAATCCGAATATTGAGGAAGAAACGAGATTCAATCCAACAAGCTGAAGAACCCGGAGGATGGAATTGCAACTGGGTTTGATTGAACAATCGCTTAACAGTCGCTATTCGCTCTGGGTTCGTGAAGCTCTTTACGATTTGTCGGATAATTTTACAATCACTGACCCCAGTATAGCGGGTCACCCAATTGTGTTCGTGAGCCCTGGATTCTTGAAGATGACTGGATATACCAAAGAAGAGGTGATTGGCAAAAATGGTAGGATGTTTCAGGGCCCAGAAACTAGTAGGAGCTCAGTAATGCAAATTCGTGAGGCAGTTCGGGAAGAGAAAGGGATTCAAATTAATTTACTAAATTATCGCAAAGATGGGACACCCTTCTGGGTTTTCTTCCAAATGACCCCTGTTTTCAGCAAGGAAGATGGGGGGGTCATTCACTTTGTGGGTGTTCAGGTGCCGATTTTGAAGAATTCAAGAAAGTCTAGATGTGGGTTCGTAAGAATTCAAGGTGTTCCATATGAGAACGAATTTAGAGCTTGCAAAAGTCTTTTAGGGTCCTGTCGCCGGGAGTTATTGTCTGATTCTATCTCGGAACTAGATTGTCTTTTGAATAGAGATTCACCACCGGATTCTGATAGTAGAGATTCCATATTCATTTTGAGGCAAAAGTACAAGTTTATGGTCTGTTACCATTGTTCATTCAGAGCATTAGTCACTTTTCCACTAGTTGTTATTTTATTTTTATTTTCATCTTTGGTTATAATATCGGCCATTGAGTTTCTACTGAGTGGATATCTCATAGGAGTAGAGATTGAAGAACCATGTGAAGCATGTGATGATGAGAAGCAAAGAGCTGCAATTGCCATTGGTAACATCTTATCTGTCCTAACTCATTACAGTGAGGTAACTGGCAGATTGGTGTGCGAAAGGAGATGCAGCTTGCCTAGGGTGGGCATTCTTTGTTCATCCTTGAATACATCTCTTAATAGAATTAAACAGAGCTTTGTATTAACCGATCCAAACTTACCAGACATGCCTATAGTTTATGCGAGTGATGAGTTTTTGAAATTAACAGGTTATACTAGATGTGAAGTGCTTGGGCGCAACTGTAGATTCTTAAGTGGAATTGACACAGATTCTTCAACCCTTTTTAAGATAAAGGAAAGTCTTCAGTCTGAACAAGCTTGCACCGTACGGATTTTAAATTACAGGAAAAATAAGAGCTCATTTTGGAATGATCTCCATATATCACCTGTCCGTAATGCTTCTGGCAAGGTAGCATATTTTGTGGGTGTCCAGATGGATGTAGATGATAAAATACAGGATGAACATGGGTTGAACCCTAAGATGAAGCAACTTAGCACTGTGGGTGCAGTCAGGGTGGCCGTGAGGAGCCTGTCGATGACCGTGGGCTGTTCACAGGGCTAGCCCCTTTTCCACGTTTTGAATAGTAATACTAAATTTTCTCTGTAATTACATCTTCTGAAGAGGTATATAAGATAAGACAGTAGATGTTCATAAACATTATTGTAAAGTTCACATTTTTCTAATATATGGAATGGAAAGTGCTTCAATTTAAGTTGAAA 2282 40.4 MELQLGLIEQSLNSRYSLWVREALYDLSDNFTITDPSIAGHPIVFVSPGFLKMTGYTKEEVIGKNGRMFQGPETSRSSVMQIREAVREEKGIQINLLNYRKDGTPFWVFFQMTPVFSKEDGGVIHFVGVQVPILKNSRKSRCGFVRIQGVPYENEFRACKSLLGSCRRELLSDSISELDCLLNRDSPPDSDSRDSIFILRQKYKFMVCYHCSFRALVTFPLVVILFLFSSLVIISAIEFLLSGYLIGVEIEEPCEACDDEKQRAAIAIGNILSVLTHYSEVTGRLVCERRCSLPRVGILCSSLNTSLNRIKQSFVLTDPNLPDMPIVYASDEFLKLTGYTRCEVLGRNCRFLSGIDTDSSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHISPVRNASGKVAYFVGVQMDVDDKIQDEHGLNPKMKQLSTVGAVRVAVRSLSMTVGCSQG 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45600411 45603965 + XM_039037367.1 Bhi07g01608 39997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01608 454 CDD PAS 322 415 IPR000014 -
Bhi07g01608 454 SUPERFAMILY PYP-like sensor domain (PAS domain) 314 415 IPR035965 -
Bhi07g01608 454 SMART pac_2 376 418 IPR001610 -
Bhi07g01608 454 SMART pac_2 93 136 IPR001610 -
Bhi07g01608 454 Gene3D PAS domain 313 449 - -
Bhi07g01608 454 Gene3D PAS domain 30 161 - -
Bhi07g01608 454 ProSiteProfiles PAS repeat profile. 326 348 IPR000014 -
Bhi07g01608 454 ProSiteProfiles PAC domain profile. 373 427 IPR000700 -
Bhi07g01608 454 CDD PAS 43 133 IPR000014 -
Bhi07g01608 454 TIGRFAM sensory_box: PAS domain S-box protein 43 128 IPR000014 -
Bhi07g01608 454 TIGRFAM sensory_box: PAS domain S-box protein 326 422 IPR000014 -
Bhi07g01608 454 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Bhi07g01608 454 PANTHER PROTEIN TWIN LOV 1 248 446 - -
Bhi07g01608 454 PANTHER PROTEIN TWIN LOV 1 8 45 - -
Bhi07g01608 454 PANTHER PROTEIN TWIN LOV 1 20 134 - -
Bhi07g01608 454 Pfam PAS domain 313 415 IPR000014 -
Bhi07g01608 454 Pfam PAS domain 41 131 IPR000014 -
Bhi07g01608 454 ProSiteProfiles PAS repeat profile. 43 89 IPR000014 -
Bhi07g01608 454 SMART pas_2 18 87 IPR000014 -
Bhi07g01608 454 SMART pas_2 301 374 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01608 - - - bhj:120082129 872.078
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01608 Bhi-Chr7:45600411 Bhi07g01610 Bhi-Chr7:45600417 0 dispersed
Bhi07g01607 Bhi-Chr7:45600411 Bhi07g01608 Bhi-Chr7:45600411 0 tandem
Bhi07g01608 Bhi-Chr7:45600411 Bhi07g01609 Bhi-Chr7:45600413 4.25E-21 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g848 . . . . . . . . Cmo04g01708 . . . . . . . Cpe01g01442 Bhi07g01608 . . . . . . . . . . . . . Cone13ag0984 Cone19ag0974 . . Lsi04g00459 Csa05g02417 Chy10g00974 Cme10g00448 . . . . . . . . . . . Cma04g01630 . Car04g01670 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013588 0 4 0 0 0 0 2 0 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 1 1 25