Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01619 ACCGTGGTAGTTCAACTCATTCGCAACGCAAACAAAACTTGGTTCGAAACTCGGGTGCCTCATCGAAGAAAAGTTCCGTCTTTCATCTCGGCGCCGTCCACAGTCTTCCGCCGGAAAACTCAAGCGGAGCAAATTACTTTAAGAAAAACGACGGTCCTAAATTAAGATTGACCCTTCGTTAGTTGCAGAATTGATCCATGATTTGATCTCCAATTAATGGAAGACGACGTCGAGCAAGAGATATGGAGTTGGGGGGCAGGAACAGACGGCCAGCTGGGCACCGGACGACTCGAGGACGACAATCTCCCTCAACTCCTCCGAAATCCGACACTTTCCTCCGCCACCCCCATCTCATCCCTTTCCTGCGGTGGCGCTCATGTTATCGCTTTGACTGCCGGTGGTGGGGTACTTGCATGGGGAAGAGGCAATTCAGGGCAGTTAGGGCTAGGAGACATGGCAAGCAGCTTACACCCTAAGCCAATGATGGGGTTGGGTAGCTACTTCATAACCCAAGTTTCTGCTGGATGGAGCCATTCTGGTTTTGTTTCAAGTCAGCATATTAATTATTGGTTCTTCTTTATGAAGTCTTGCATTACATCTTTCAGTAGAACCCTGTTTCCATTTTTCTGGTTTTTTGTTGTAGACGAGGGAAAGCTTTATACTTGTGGAGATGGCTCATTTGGGCAGTTAGGGCATGGTGATTACCAGTCACGTTGCTTCCCTGATGAGGTCTTGTTTTTCTCTGATAAACATGTTGATCAGATTGCATGTGGAATGCGCCACTCGCTTGCATTGGTGAAAGGTTGTTCTGGTGATCAAGTTTATGGATTTGGAGCTGGGAAACGCGGTCAATTGGGTATCTCCAAGAAGATTCAGACTATTAATCTTCCCATACTTTCTTCCGATTTGGAAGCTGCTGAAATAGTTGGCATAGCTGCTGGTGGTGATCACAGTGCTGCTCTATCCTCTGATGGGCATCTCTACATTTGGGGAAGGGGATTCAAAAGCAATTCAGATGCATATTCTCCTCAACATCTACCTTCACCTTTGTCGTTCAGTAAAGTTGCTCTTGGATGGAATCATGCACTAGTTTTAACTTATGAAGGGGAACTTTATATGCTTGGCGGCAAACATCATGGAGCGCTGAGTGGTTCTGAAATGCTAAATGCAATGAAGTCTCTGCCTGGTGATTCCGAGGAAGATAATTTCCAACCAATCCCGCCTCTTAGTGGAATAAAAGTTTTGGATATTGCGGCCGGGGCTGAGCATTCTGCAATCGTTACAGAGGATGGTGCTGTAAAGACTTGGGGTTGGGGGGAGCATGGTCAGCTGGGTTTGGGAGATACATGTGACCACACCAATCCACAAACGGTGAATTTAAACCTCAAACAGAAGAGTACTGCTTTAGACATCAAAGTCTATTGTGGCAGTGGCTTTACAGTTGCTGTTGCAACATCCCATGCTGCTTCAAATCTCCCCAATTGAAACTGCATTGCTTTTTGGAGACAACTCCAGTGAGCTGCCTGGCAGCTGATCTGCCACTAGATGATTTTTAGCTTTTGATATGTAAAGTATGAGGAAAAAAGGGACGAGGATCAAAAGCAATACTACAAAATTTTATTGAGCTAA 1629 45.67 MEDDVEQEIWSWGAGTDGQLGTGRLEDDNLPQLLRNPTLSSATPISSLSCGGAHVIALTAGGGVLAWGRGNSGQLGLGDMASSLHPKPMMGLGSYFITQVSAGWSHSGFVSSQHINYWFFFMKSCITSFSRTLFPFFWFFVVDEGKLYTCGDGSFGQLGHGDYQSRCFPDEVLFFSDKHVDQIACGMRHSLALVKGCSGDQVYGFGAGKRGQLGISKKIQTINLPILSSDLEAAEIVGIAAGGDHSAALSSDGHLYIWGRGFKSNSDAYSPQHLPSPLSFSKVALGWNHALVLTYEGELYMLGGKHHGALSGSEMLNAMKSLPGDSEEDNFQPIPPLSGIKVLDIAAGAEHSAIVTEDGAVKTWGWGEHGQLGLGDTCDHTNPQTVNLNLKQKSTALDIKVYCGSGFTVAVATSHAASNLPN 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45807661 45810474 + XM_039036092.1 Bhi07g01619 40008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01619 422 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 252 IPR000408 -
Bhi07g01619 422 SUPERFAMILY RCC1/BLIP-II 137 414 IPR009091 -
Bhi07g01619 422 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Bhi07g01619 422 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 183 193 IPR000408 -
Bhi07g01619 422 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 145 196 IPR000408 -
Bhi07g01619 422 SUPERFAMILY RCC1/BLIP-II 7 113 IPR009091 -
Bhi07g01619 422 PANTHER OS01G0777800 PROTEIN 140 404 - -
Bhi07g01619 422 PANTHER OS01G0777800 PROTEIN 9 112 - -
Bhi07g01619 422 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 140 404 - -
Bhi07g01619 422 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 112 - -
Bhi07g01619 422 PRINTS Chromosome condensation regulator RCC1 signature 8 24 IPR000408 -
Bhi07g01619 422 PRINTS Chromosome condensation regulator RCC1 signature 45 58 IPR000408 -
Bhi07g01619 422 PRINTS Chromosome condensation regulator RCC1 signature 64 80 IPR000408 -
Bhi07g01619 422 PRINTS Chromosome condensation regulator RCC1 signature 286 304 IPR000408 -
Bhi07g01619 422 PRINTS Chromosome condensation regulator RCC1 signature 354 375 IPR000408 -
Bhi07g01619 422 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 7 61 IPR000408 -
Bhi07g01619 422 Pfam Regulator of chromosome condensation (RCC1) repeat 8 58 IPR000408 -
Bhi07g01619 422 Pfam Regulator of chromosome condensation (RCC1) repeat 144 193 IPR000408 -
Bhi07g01619 422 Pfam Regulator of chromosome condensation (RCC1) repeat 358 411 IPR000408 -
Bhi07g01619 422 Pfam Regulator of chromosome condensation (RCC1) repeat 201 249 IPR000408 -
Bhi07g01619 422 Pfam Regulator of chromosome condensation (RCC1) repeat 62 109 IPR000408 -
Bhi07g01619 422 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 62 113 IPR000408 -
Bhi07g01619 422 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 358 IPR000408 -
Bhi07g01619 422 Gene3D - 135 320 IPR009091 -
Bhi07g01619 422 Gene3D - 4 122 IPR009091 -
Bhi07g01619 422 Gene3D - 321 417 IPR009091 -
Bhi07g01619 422 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 414 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01619 - - - csv:101206976 693.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01619 Bhi-Chr7:45807661 Bhi07g01621 Bhi-Chr7:45807915 1.31E-06 dispersed
Bhi07g01618 Bhi-Chr7:45807660 Bhi07g01619 Bhi-Chr7:45807661 0 tandem
Bhi07g01619 Bhi-Chr7:45807661 Bhi07g01620 Bhi-Chr7:45807663 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34