Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01827 GAAGCTTACCCAAGTTATTAAACTACTCGATATATAATAATCGGTGTGCAAAATCTCTTTTTTACCCAAATTCAAGCCCAGAAAGAGACCAGGAAACTTCTCTACTTTCAACGATAGTGATAATTGAACAGGTGAATTGTTGAATTTGTGTGTACTTTGTTTTGCTTAATACTGAAGGAATTGTTCAGAGTTTTTGAGTTATGGGAGGTAAGAATTCTAGGGAAGGAGGTCAAAGAGAGCTCTATTCATATGGGTCTGGTAATTCTTCAACATGGGATCAATACAATTTTCCTCCACCATCTCCACATGTTCATCAATATCCATATGCAGAACCTTCTGATTATGGCTCACAAACGCCTCAACCACAGAGAAGGCTGGACAGAAAATATTCAAGAATAGCAGATAATTACCAATCCTTGGATGAGGTGACTGCTGCTCTTGCTAAAGCCGGACTGGAGTCATCTAATCTCATTGTGGGAATTGATTTCACGAAGAGCAATGAGTGGACAGGTTCAAGGTCGTTTAATCGACGTAGTTTACACCACATTGGGAACGGGCAGAATCCATATGAACAAGCTATATCTATAATAGGACAGACATTATCAGCTTTCGACGAGGATAACTTGATTCCCTGCTTTGGATTTGGAGATGCATCAACCCATGATCAAGATGTTTTTAGCTTCTATGAGGATGACAGGATATGTAATGGATTTGAGGAAGTTTTGCATCGTTACAGGGAAATTGTTCCCAACTTAAAACTTGCAGGGCCTACATCTTTTGCACCAATAATTGAGATGGCCATGACAATAGTTGAGCAATCTGGTGGTCAGTACCATGTTTTGCTGATAATTGCCGATGGGCAGGTCACAAGAAGCGTTGACACGCATAACGGTCAACTGAGTTTACAAGAACAAAAGTCAATCGATGCAATTGTAAGGGCGAGCGAGTACCCGTTGTCAATAATCTTAGTTGGTGTCGGAGATGGGCCTTGGGATATGATGAAGGAATTTGATGATAACATCCCAGCCCGAGCTTTCGATAATTTTCAGTTTGTCAATTTCACCGAGATGATGTCGAAAAATGTAAACAATGTCAGAAGGCAAACAGAATTTTCCCTCGCTGCATTGATGGAAATACCTTCTCAATACCTGGCAACTCTAGAGCTTGGCTTATTGGGAAGACAAAGAGGGATTTCACCAGAAAGAGTACCTCTTCCCCCTCCTGTGTACAATGGCTACTCAAGAACCCCGCGCTCAAACAATTTTCCGACCAGAACACCTTCACTTGGTAGATACAACCAAGGAGTTGGCACAACTTCATCCTCAAGTTCTCATTATGACAACCAGCTTTGCCCCATTTGTCTCACAAATCCAAAGGATCTGGCTTTTGGTTGTGGCCATCTGACATGTTGCGACTGCGGAGAAAATCTCGAGTTGTGCCCCATATGCCGAAGCTTTATTCAGACTAGAATAAGGCTTTACTAAGTCTTGCCATACTGTATAAATGGGTCATTTATCCTATTTTTTGGCTCCTTGAAACTTACATTGAAGGTCGAGGCTTCAACACAACTTGAGGGTATAGAGTATTATATCGTCTTGATTGTGTTTTGAACCTACCCCATTTGATGACAGTTTCAAAGAACATCAATATTGTTCTACTGAGAGTTTGTACATATGGGATGTTTTTCTGTCTGCTTCATCACAAGATCAAACACAACTATAGCCATTGATTCGAAATTATAAACACAATGACACGTAGAGGATTCAATGACACGTAGAGGATTTGCAGAAGCTTCAAAGATGGAGATCGTGTTAATCTTATCATTAAGCTTATTTCTTTCTTAGAATCCTTTTTGTGTGTGTGTGTACATATTGGTCTTTAGGTTGTTGCATAAATCTTTCAAACTTGTTTATCTTTATCTTCAACAAAGCAGACGTTTTTTCCTTCAATAAAATTCATCATTGTCA 1967 39.81 MGGKNSREGGQRELYSYGSGNSSTWDQYNFPPPSPHVHQYPYAEPSDYGSQTPQPQRRLDRKYSRIADNYQSLDEVTAALAKAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGNGQNPYEQAISIIGQTLSAFDEDNLIPCFGFGDASTHDQDVFSFYEDDRICNGFEEVLHRYREIVPNLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTHNGQLSLQEQKSIDAIVRASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEMMSKNVNNVRRQTEFSLAALMEIPSQYLATLELGLLGRQRGISPERVPLPPPVYNGYSRTPRSNNFPTRTPSLGRYNQGVGTTSSSSSHYDNQLCPICLTNPKDLAFGCGHLTCCDCGENLELCPICRSFIQTRIRLY 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49631284 49635018 + XM_039036228.1 Bhi07g01827 40216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01827 427 Pfam Copine 112 326 IPR010734 -
Bhi07g01827 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 427 IPR013083 -
Bhi07g01827 427 SMART VWA_4 87 290 IPR002035 -
Bhi07g01827 427 Pfam Zinc finger, C3HC4 type (RING finger) 381 422 - -
Bhi07g01827 427 SUPERFAMILY vWA-like 89 271 IPR036465 -
Bhi07g01827 427 PANTHER RING-FINGER PROTEIN 1 427 - -
Bhi07g01827 427 MobiDBLite consensus disorder prediction 339 378 - -
Bhi07g01827 427 SUPERFAMILY RING/U-box 375 423 - -
Bhi07g01827 427 MobiDBLite consensus disorder prediction 1 58 - -
Bhi07g01827 427 MobiDBLite consensus disorder prediction 15 30 - -
Bhi07g01827 427 CDD RING-HC_RGLG_plant 383 427 IPR045317 GO:0061630|GO:0070534
Bhi07g01827 427 ProSiteProfiles Zinc finger RING-type profile. 384 417 IPR001841 -
Bhi07g01827 427 MobiDBLite consensus disorder prediction 346 378 - -
Bhi07g01827 427 CDD vWA_copine_like 66 316 IPR010734 -
Bhi07g01827 427 PANTHER COPINE FAMILY PROTEIN 1 1 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01827 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101204341 773.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00673 Bhi-Chr1:12391445 Bhi07g01827 Bhi-Chr7:49631284 1.05E-24 dispersed
Bhi01g00674 Bhi-Chr1:12391445 Bhi07g01827 Bhi-Chr7:49631284 1.05E-24 dispersed
Bhi07g01827 Bhi-Chr7:49631284 Bhi11g01574 Bhi-Chr11:45582496 0 dispersed
Bhi07g01827 Bhi-Chr7:49631284 Bhi07g01828 Bhi-Chr7:49631405 0 tandem
Bhi10g00922 Bhi-Chr10:18942708 Bhi07g01827 Bhi-Chr7:49631284 4.57E-162 transposed
Bhi02g00591 Bhi-Chr2:11070689 Bhi07g01827 Bhi-Chr7:49631284 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136