Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01834 TTTCATCACCATTTCTTCATCTTCCCCTGGTTCCTCTGTTCTTCACTCGCCGGCATGAGGGTACGATCCTGGCTACTCCCCTGCTCCACCGCCGCCGCTTCTTCCGCCGAACCCAGTAATAATAAACCGCCCGATTCCTCCTCCTATTTAATTTCCGACGCCAGCAGCCTTTCCGACACGTCGGCTAACTCATCATCGTCGTCGACTCCTAGTTCCGACACGAGCTGTTCCAGTCTCCAGAGCAATCTCTCCCTTCAATCTCTACCATCCATTCCATCTCTTCAGAAACTCCCCACCGCCACCGATTCCTTCAACGTCACTCTTTCTCAATTCCCCGTCGCCTCTTTCAAGCTCCCAATCTCCCATCTCGCCGTTCACGGTGCTTACCTCTACGTCGCCACCGCTCACGTAATCAACGTCTACGATCGAATCACTTTCTCCCACATCACAACATTCAATGCTCAAGATTCCTCCTCTGGTTCCGTTAAGGGAATCGCCTTCCTCCACCGCGAAATCCTCACTTCTCATCAAGACGGCAAAATCCGCGTCTGGAATTTACCTGAGAAGAAGAACAATCAATTCAAATTAGTCAACACTCTCCCTACAGTCAACGACCGCCTTCGCCGATTTATACTCCCGAAGAATTACGTCAACGTCCGTCGTCACAAAAAAGTCCTCTGGATTCAACACGCCGACGCTGTCACTGGACTCGCCGTCAACAACGATTCGATTTACTCTGTGTCTTGGGATCGGAGTTTGAAAATCTGGCGAGGCTCCAACCACCGGTGCATCGAGTCGGTGAAAGCAGCGCACGAAGACGCCGTAAACGCGGTGGCTGTTTCCGCCAGGGGGACTGTGTACACCGGTTCAGCCGATCGGAAAATCCGAGTGTGGGAGAAACCGGAGACGGAGAAACGACATGTACTTGTAGCGACTTTAGAGAAGCACAAATCGGCGGTGAATGCATTGGCGTTAAACGACGACGGTTCGTTGCTATTCTCCGGGGCGTGCGACCGGTCGGTTCTGGTTTGGGAAAGAGAAGACAGCGCGAAATACATGGCGGTGATCGGAGCATTGAGGGGTCACAAAAATGCGATTCTGTGTTTGATCTACGTCTCTGAATTGTTGTTGAGTGGGTCCGCAGATCGGACGGTGAGGGTGTGGCGACGTGGAGCAGATGGGAGTTATAATTGTTTGTCAGTACTGGAAGGTCATAAAAAACCGGTGAAATCGCTGGTGGTTGTGTCGGAGCCGGAGGAGATGTTAAACGGTGTCGTATCTGTGTGTAGTGGGAGCCTTGATGGAGAGCTTAAAGCTTGGAAAATTTCTTTTTCGAATATTAACAGTCCATTGCGGAATTCGAATATTACGAATTGCAGATAATGGATTGGAATAATCAAGTTTGCACTTTAGGAACAAAATTTTGTACATTTTTTTTTTAAAAAAAAACCTATTTTATTGTTTTGAAAATTTTAAGTGTGAATTTTTGCAGGTTTGGTAGGTAATTCATAAGGCTTTGATTCGTAATTTCTACTTTTTCTGGTTATTAATGCTTAAATTCGAAACTTGTAATTATTGTTAATTTACTTTTGCTAATGGTAGTATTCTTTTAATTGTCAA 1620 46.98 MRVRSWLLPCSTAAASSAEPSNNKPPDSSSYLISDASSLSDTSANSSSSSTPSSDTSCSSLQSNLSLQSLPSIPSLQKLPTATDSFNVTLSQFPVASFKLPISHLAVHGAYLYVATAHVINVYDRITFSHITTFNAQDSSSGSVKGIAFLHREILTSHQDGKIRVWNLPEKKNNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNNDSIYSVSWDRSLKIWRGSNHRCIESVKAAHEDAVNAVAVSARGTVYTGSADRKIRVWEKPETEKRHVLVATLEKHKSAVNALALNDDGSLLFSGACDRSVLVWEREDSAKYMAVIGALRGHKNAILCLIYVSELLLSGSADRTVRVWRRGADGSYNCLSVLEGHKKPVKSLVVVSEPEEMLNGVVSVCSGSLDGELKAWKISFSNINSPLRNSNITNCR 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49745524 49747143 - XM_039037318.1 Bhi07g01834 40223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01834 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 370 IPR001680 GO:0005515
Bhi07g01834 442 Gene3D - 77 194 IPR015943 GO:0005515
Bhi07g01834 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 281 IPR001680 GO:0005515
Bhi07g01834 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 327 - -
Bhi07g01834 442 Gene3D - 197 286 IPR015943 GO:0005515
Bhi07g01834 442 MobiDBLite consensus disorder prediction 13 60 - -
Bhi07g01834 442 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 429 IPR045182 -
Bhi07g01834 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 281 - -
Bhi07g01834 442 SMART WD40_4 242 281 IPR001680 GO:0005515
Bhi07g01834 442 SMART WD40_4 334 371 IPR001680 GO:0005515
Bhi07g01834 442 SMART WD40_4 377 423 IPR001680 GO:0005515
Bhi07g01834 442 SMART WD40_4 288 327 IPR001680 GO:0005515
Bhi07g01834 442 SMART WD40_4 127 167 IPR001680 GO:0005515
Bhi07g01834 442 SMART WD40_4 203 239 IPR001680 GO:0005515
Bhi07g01834 442 Gene3D - 287 439 IPR015943 GO:0005515
Bhi07g01834 442 Pfam WD domain, G-beta repeat 339 370 IPR001680 GO:0005515
Bhi07g01834 442 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Bhi07g01834 442 Pfam WD domain, G-beta repeat 211 238 IPR001680 GO:0005515
Bhi07g01834 442 Pfam WD domain, G-beta repeat 247 280 IPR001680 GO:0005515
Bhi07g01834 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Bhi07g01834 442 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Bhi07g01834 442 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Bhi07g01834 442 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Bhi07g01834 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 370 - -
Bhi07g01834 442 PANTHER F21J9.19 17 429 - -
Bhi07g01834 442 SUPERFAMILY WD40 repeat-like 108 425 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01834 - - - csv:101204588 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00295 Bhi-Chr4:6859212 Bhi07g01834 Bhi-Chr7:49745524 9.61E-67 transposed
Bhi05g01171 Bhi-Chr5:41880529 Bhi07g01834 Bhi-Chr7:49745524 7.62E-08 transposed
Bhi08g01453 Bhi-Chr8:42602115 Bhi07g01834 Bhi-Chr7:49745524 7.87E-13 transposed
Bhi09g02581 Bhi-Chr9:70196486 Bhi07g01834 Bhi-Chr7:49745524 1.55E-44 transposed
Bhi10g02212 Bhi-Chr10:56769148 Bhi07g01834 Bhi-Chr7:49745524 1.65E-73 transposed
Bhi11g02555 Bhi-Chr11:69496361 Bhi07g01834 Bhi-Chr7:49745524 3.78E-75 transposed
Bhi12g01125 Bhi-Chr12:33773179 Bhi07g01834 Bhi-Chr7:49745524 3.49E-77 transposed
Bhi02g00576 Bhi-Chr2:10934513 Bhi07g01834 Bhi-Chr7:49745524 1.20E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49