Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01835 AATCGGCTCCACGTGTACGGCCGTCGTTTCATCAGAAAGCACCTCCAGGGGCATTCCCGTCATTTGGTCTTCGTCTTTCCAGAGAGCAAAGGACATTTTCATGGACCTTGGCCCCAAAAAGGTGGATTATACTACAGGAAAGCAAATTAAACCAAACCCTTTCCGGTTCTTTCCTCTGCTTTTTTCCACTCAACTTTTTCACTCTCAGATACCGTAGACACAAATCCATAGCATTTTTTGTTTTTGTTTCATTACTTGCAAACGCAAAACCCAGACAAACAGAGACGACGGCGACGACGACGACGACGCATTCTTATTCCGCCATGTCCTATACTTGAGTAAGACCCACAGACACTAAAAACAGCTATTCCCTCCGTTTCCGCTCGACCCACTTGAGTTTTTCCACCGCGCATGGCGGAAACCGGCGTCTATGGCCGTTTTCTGGCGGGGGGCTTAGACCCAACGGCCCAAGAGTTCCGGCCAAGGTATTCGACTACTCTGTTTATGCCACAACCCCATCGGGTATTCTTTCCGTACCCACCAATTGGCGACGTCCCTCTCCTGCCGTACTGCGATGGCGGTGTAGCTTACGCGCCCTTTCCGGCGGCGGAATCGGCGTACGTTCCGGTACGGTTGCCGGTTTCGTCGGTTGCCACTCGGTCGTTGGTGGTGAGTTCGGTTCCTTGCGACGTAAGCGAGACGATGGTGAGAAGGGAATTGGAAGCGTTTGGGGAGGTTCGAGGAGTGCAAATGGAGAGAGTTAAAGAAGGGATTGTCATTGTTCATTTCTATGATATTCGCCACGCTGAGAGAGCTTTACGAGAGATTCGAGATCAGCACATGCACCATCAATGCCGTCTTCGTAACTACTTCAACAACAACAACAATAACGGTTTCTTGTTTTCAAATTCCCCTCTCCCTCGCCCTTCTCCGGCGCCTGGTCTCATAGCCGGCCATGCTGTCTGGGCTCAGTTCATCGTTCCGGCTGGCAAGAATCAGGGCACCATCGTTGTCTTCAATCTTGACTCCACCGTTTCCACTTCTTGTCTCAGAGAAATCTTCGAGGCTTTTGGTCCTGTGAAGGAGTTGAGAGAGACGCCATTAAAGAAGCAACAAAGGTTCGTTGAATTTTTCGACATCAGGGACGCCGGAAAGGCTCTTAAGGAGATGAACGGAAAGGAAATCAATGGAAAATCGGTTGTGATTGAGTTCAGTCGGCCGGGAGGCCATGGCAACAAATTCTTCAACGCCAACTTGACTGCTCCGGCTATCTGCAGTTCGAATAATCTTTACTCTAGGAGTCTGAAATGCCCACCGCCACGGCCAACACCGCCGCCGAGAAATTTCTCTGGTGGGGCAGCTTCAAATGTTCCACCGCGTTGGTATTATTCGAAACCCCATAATTCCTCTAGGAAATTGAATCCGAGCAAGGGGGGTCGAAGCCCGAGAAACCCCAGAAAGAGCTTGGAGTACGACGATGTGAATGGAAAAATGGCATCTCTCGATTTGGAAGACGGTGGTGTGTGCAATGAAATTGAAGAGAGAGAATCATGTGGGGTTTTGAGAAAGAATTCAAAGGTCAGCCACAGTAGTCCCGCTGTTGCTGCTGACCAACAACTGCAGCCCAGTAGGAATAAGCTAAGGAAATGTAGACAGTCCAGGAAGTTTGATTCTCGATTCCTGATAAACGATAACCATTCCGATTGCAGAGATTCAAGAACCACTGTGATGATCAAGAACATCCCCAACAAGTACAGTCAGAAATTGTTGTTGAACATGTTGGACAATCATTGCATTCACTGCAACGAGCAGATGGGCGATGACCATAACCAGCCACTTTCCTCCTACGATTTCGTATATCTCCCCATTGATTTCAACAACAATTGCAATGTTGGATATGGGTTTGTAAACATGACCTCACCAGAGGCCACATGGAGGTTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTTAACTCCAGAAAAATCTGTGAAGTCACCTATGCTAGAGTACAGGGACTGGAATCACTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGTGAGATGGACCACTACCTGCCAGTGGTGTTTTCACCGCCTCGGAACGGGAGGCAACTGACGGAGCCACTGCCGATTGGTGGCCAGAGACAGCCCATCTCCATTGGCCTTGCATCTGCTCCATCTTCTGGCAGTGCTGAGATGGAGGATGAAGATGATGTTGCACTCGCAACAACACTGGTTGACCAACAGGAGGAAGGCATGAATGGAAGCAGCAGCAGCAGCAGCAGTGGCAGTGGCAGCATTGGTTGCAGTAGCCAAAGTGGCGGTGGTGTTGATGAAGAAGAATACGACGGTGATGAGTATCAAGTTTCCTAAAAATGGCTGCAAAATGTGGATAGAAATACAAAGACATGGTAGGCTAATTCTTAGTCTCTTACTGACTTGCCTGCTGTGCACCAATGGCTTCCACTTAGCAGCAGCCAGCTTGGTTAAAGGTCAAAGCTTTTTAATTTGGGTATTTTTCCCCAGGTTAGAAACCAGCTCTTTCCTTTTCCCCTCTCTTTTTCTCACATATGGGGTGTATTAAATTTCTTCCTCCATGCTCAGATGCTGTAACATTATCATTGTAGCAAAAGTCCCAAAAGAAGTATCCCCTTTCTTTCTTATGGTTTATTTTTGGGTA 2689 48.08 MAETGVYGRFLAGGLDPTAQEFRPRYSTTLFMPQPHRVFFPYPPIGDVPLLPYCDGGVAYAPFPAAESAYVPVRLPVSSVATRSLVVSSVPCDVSETMVRRELEAFGEVRGVQMERVKEGIVIVHFYDIRHAERALREIRDQHMHHQCRLRNYFNNNNNNGFLFSNSPLPRPSPAPGLIAGHAVWAQFIVPAGKNQGTIVVFNLDSTVSTSCLREIFEAFGPVKELRETPLKKQQRFVEFFDIRDAGKALKEMNGKEINGKSVVIEFSRPGGHGNKFFNANLTAPAICSSNNLYSRSLKCPPPRPTPPPRNFSGGAASNVPPRWYYSKPHNSSRKLNPSKGGRSPRNPRKSLEYDDVNGKMASLDLEDGGVCNEIEERESCGVLRKNSKVSHSSPAVAADQQLQPSRNKLRKCRQSRKFDSRFLINDNHSDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMGDDHNQPLSSYDFVYLPIDFNNNCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLESLKEHFKNSKFPCEMDHYLPVVFSPPRNGRQLTEPLPIGGQRQPISIGLASAPSSGSAEMEDEDDVALATTLVDQQEEGMNGSSSSSSSGSGSIGCSSQSGGGVDEEEYDGDEYQVS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49803504 49806838 - XM_039035963.1 Bhi07g01835 40224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01835 656 MobiDBLite consensus disorder prediction 299 358 - -
Bhi07g01835 656 PANTHER RNA BINDING PROTEIN 32 628 - -
Bhi07g01835 656 MobiDBLite consensus disorder prediction 386 407 - -
Bhi07g01835 656 CDD RRM3_EAR1_like 436 537 IPR034458 -
Bhi07g01835 656 PANTHER TERMINAL EAR1-LIKE 1 32 628 - -
Bhi07g01835 656 SUPERFAMILY RNA-binding domain, RBD 197 515 IPR035979 GO:0003676
Bhi07g01835 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 263 IPR000504 GO:0003723
Bhi07g01835 656 Gene3D - 192 276 IPR012677 -
Bhi07g01835 656 SUPERFAMILY RNA-binding domain, RBD 77 146 IPR035979 GO:0003676
Bhi07g01835 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 157 IPR000504 GO:0003723
Bhi07g01835 656 SMART rrm1_1 84 151 IPR000504 GO:0003723
Bhi07g01835 656 SMART rrm1_1 198 266 IPR000504 GO:0003723
Bhi07g01835 656 CDD RRM1_EAR1_like 82 150 - -
Bhi07g01835 656 MobiDBLite consensus disorder prediction 613 639 - -
Bhi07g01835 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 270 IPR000504 GO:0003723
Bhi07g01835 656 MobiDBLite consensus disorder prediction 569 656 - -
Bhi07g01835 656 Pfam RNA recognition motif 2 436 546 IPR007201 -
Bhi07g01835 656 Gene3D - 78 155 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01835 - - - cpep:111791714 1102.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01835 Bhi-Chr7:49803504 Bhi12g02386 Bhi-Chr12:75414632 6.61E-25 dispersed
Bhi05g02047 Bhi-Chr5:62683457 Bhi07g01835 Bhi-Chr7:49803504 1.06E-26 transposed
Bhi09g02643 Bhi-Chr9:71180617 Bhi07g01835 Bhi-Chr7:49803504 2.90E-34 transposed
Bhi12g01332 Bhi-Chr12:40297209 Bhi07g01835 Bhi-Chr7:49803504 9.35E-33 transposed
Bhi04g00605 Bhi-Chr4:14358256 Bhi07g01835 Bhi-Chr7:49803504 7.35E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54